RnoINT0169272 @ rn6
Intron Retention
Gene
ENSRNOG00000029678 | Znf354b
Description
zinc finger protein 354B [Source:RGD Symbol;Acc:7562538]
Coordinates
chr10:36411963-36419926:-
Coord C1 exon
chr10:36419676-36419926
Coord A exon
chr10:36414333-36419675
Coord C2 exon
chr10:36411963-36414332
Length
5343 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
AATTTCTGCTTTTCTTCCAGGAT
3' ss Score
10.22
Exon sequences
Seq C1 exon
CTTGGCCTCTGCCTGACACATCCTGTCACATGACAGGGAGCAGTTTAAGTACCCAGTAGAAGTGTAGCTGGGTTCCCCACACATTTGGAATGCTTGTCCACGTTAAAAAAAGACGGAGTCTTTTTAGTGTTATTGCTAATTTTGTTTGTGATCAGGATTTCCATTTACCAAACCAAAGATGATCTCCGTGCTGCAGCAAGGAGAAGAACCCTGGAAAGCGGAGAAAGAAAGCCATGGATGCTCCTCTCTTG
Seq A exon
GTGAGTGGACAAGCCTGAGATACCCCAGAATCTCCTCAAACTAAGAATGGAGGGTAGCCTTGGTACCTGGTGCCCGGAGACTGACCTGGACCAGCAGGTGCTCTTCAGTGACAGGAATCCTAAGGGGAAGGGCAAAGGGATGAAAAGATAAGGAGATAGGAAGGCTGTGGTCAGGAATGTCTTATCTCAAGCAAACTTATTAAGAAGTATAGCATCTTATATACCGCTTGTAGGCAAAATGGGAGAGAGTGGGTAGACAGCCATGATATAATGGGGCGGAGTCAACAGGAAGTCAATCAAGCAACTTGCACAAGGAGAATACACAGTATCTTAAGAATGTCACAAACTGAGTGCACAGCAACCTTGAGATGGAGAACCATAGCCCCTTGGGGTCAGAAGAATTGGGTTCTCCGGAGCTGAAGCTGAAGTTCCGCCAAAGCCCTGGCCCCAGGCCGTTACCGGCTCTGCCAAGTACTTTAGACAAGAGACTGTGTTCCTTTCTGTACATCAGGGTCTCCAGAAAACCTTAAACTGACCTGCCCCTCAACAGGAGACATCTTCAGATACTTGGTCCTCACCAAGGAATGATAGGAAAGGAAAATCCCAGGCTCCTAGACCTTAGCTCTCCCTTCTTTCGATGGTCCCTTTTCAAAAGAGTATCTCAAGATCTCTTATTTCTGAGGAGGGCTGCATTTCATGTACAAGAAATCAGTATATTTAAGGGTATATTGGAAGTAATTTTTTTTTTTAGCTGTGTGGAGGAGTCTATATAGGAAATCGAGACAAAGGAAATGAGCTTGGATAACCTCTCTAGATTTTGGTACGGTGTTAAGAGCTTCGGACTCTCCCGTGGATTATAGGAACATCTATGAAGTTTAAGGAGAATTTTACAATACCTGATATTTTAGTGGGGAAAACAAAGAGCCCATGGGAAGGGAGAAAGTTGGAGGGAGAAGAGAAAGAGCTTGAGCAGGAAAAGAGAAAATGCAGAGGCGGAAGGGAGGAGAGCAAAATGTCTGGATTCTATAGGGAAAAGCTTCTGGGAGAGGGGAAGCCCAGCCCCTCAGCTAGAAAGTTCTGATATGCCAGCCTTGTCCTGTAACAGGTGGGGACTGAGAGATGCCTGGAGAACCCGGAGGTCAGGTCTGCTTTGATATGCAAACTGCACCTCAGCTGCTTGCCTGGGTCTGAATCCCAACTGAGGAGTTGTAAGCACCTGGTGGTGGGCCCAGCCCTGTGTCCCTCAGAGATCAGCTTCCTGTCCCTAACAGGAAGGGTTGAGGGCTGGGAGCCTGGAGTGGGAGAACTGGGAGACAGGGCCGAGGCTGGACCAGGTCAGACACTGAGGATTAAGGAAGAGCTGAAAGATACCCTGTTCTGACAGACACTGAATATGAAAGCCTTTCTTTTCTAGTCTAAAGTGACACTTTCTGATGTAGAGACCATGGTTGTCTATCTTTGAAACCTTTGTTTGAAGAAATACAGTAATTCTGTGGAAACTACCAAGGCAACTTTTTTGTAGTGCTGGAGAGCCAGGCCTTGCACTTGCTAGGCAAGTTCTCTACCAGTGAGTTACACTTCCACCATATTCCTTCCTCTGCAGGGACCTATTTTCCTGTTTGTCTTCTGCCTTGTGATATTTTTTAAAAGTTTATTTTCATTTTTATGTGTGTGGATGTTCTGCCTGCAAAAATGTCTGTGCACCACATGGGTGCAGTGCTCAGGAAAGCCACAGTAGAATCAGATCCCCAGGAACTGGAGGTTTAGACAGTTGTGAGCTGCCATGTGAGTGCTAGGTAGTGAATCCAGAACCTCTGAAAGAGCAGCCAGTGCTCCTAACCACTGAGCCATCTCTCCAGTCTCCTGCCTTGCCATTTCTTATTAAAAGTTAAGCATCTGAATTTTCCTCTTCCCAGGGTCTGCTGAGGTGATGGGTGACTTTTCTCTTTAGTTATTATAAGAGACTTCTGTGCCAGTAAAACAACTGAGGTATACACTTCAAGCTACCTTATCTCCTCTCTCAGCATGTGTCCCTCTTTCTCTCCCTTAGTTCATGTGGTGACTTTCTAAATCTCCCTCAACTCCCACAGTAGGGCAATTGTTTATTTTAATGTCCTTATCCTTAAGTGTCTGGTTTTACAAAATAGGGAAGGGGCAAGTAAAGGGGGGAGGACACTGTCCTTTTAACTGTTGGGTATCCACTTCTGCCAGTGGAAAGAGGAGTGGTGTCCTGCCATTGTAGCTGACCCTCCATGCCCCTTGGATCAGAGGGCTGCTGTAGGAATGCTAGTAGGTTGCTCCTTGGAGCTGGCTGCTGAACAAGGAGTAACTGCTACTGTGTGAAATGTTCTTCAGTTTACCACCCGGGCCTTCCTGTAGACGCTGCCTGGACTCCAGAGTTCCAAAATAGTTCTAATGGTCAGATCCTGCAGGTGCATTTGCTTCTAGGGAGGGAAATAGAATCGCAGTACTTCATGCCATCACAGATGCACTCTGACTCTCTGACGTCCACCTTTTCTCCTCTACAGTTTGGGCCTTTTCTGCCTTCCTCACAGGATGCTGAGGATGAGATCGTGCATGAAGTGAAGATTTCTTTACCTCCTGTCCCACGTTAGTCTCCCTCTGCTTTCTCCCTTGTGTCCCTCCATTTTCCTGACTCTGCTTGCATCCCTCCAGCCTCCCCTCCTGCCTGGAAGCTCCACCCTCTTATTTCGTGCCCCAGCTGTTGGCTATTAGCTCTTTTGTTATAACCAATCAGCAGTAAGACAACACTCAGTCCATCTTTTTGGTTGCCTAGGCTTTGCGGGCTGATCTTTTGGGCAGGTGGGAACCACAAACATTTACAAATAGAAAACCTGGTGATGGGACTTGGAATTGACGATAGCAAAATCCTGCCAACACGTAGCTCTCTGCCGGTACATAGTGAACAGTTGAAAATACAGAGATACACTTTAATAAAATACAGAGATACACTTTAATAAAATACAGAGATACACTTTAATAAAATACAGAGATACACTTTAATAAAATATGAAGAAAGGTCATCCCCAACATAGTCCCAAAGGACAGAGAATTGTCTGGCCCAGGATGTCACCTGCTACTGAGAAATTCTGACTTTTGTGACACTTTTAGAACACTGGGTTGTTACATCCAAGAATAGCATTTTCATTCAAGATGCCCACAAAAATTCACTCGTAAAGTTTTTCAAATTTCTTATATTCCTCTTATTCTTTTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTCGGAGCTGGGGCCCAAACCCAGGGCCTTGTGCTTGCTAGACAAGCGCTCTACCACTGAGCTAAGTTCCCAACCCCTCCTCTTATTCTTTATAAGAATACTTTTGTGTGCCAATTCTATAATTCATGCTTCTTCATGAAATTAATTTTAAGAGATGTTATATCATCAACAAATACAGGCAGTTTATCAACTTGTCTAATTTATTTATCTAGATGCAATAATTAATATTTCCTTAAAGATGGATAGCAGGTAAAGTGGATATATTTGCCTTGTTCTTGACTGCAGTGAAATATACCTAGTGTCTCCTCATTAAACAAATTAATCACCGTGTGAGTGCTAGGACACAAACCCATGTCCTCTGCGAGAGTAACAGATACTCCTAACTGGCTGTCCATGTCTCCAGCCCCCTCTATTACCTTTGCATGGCTATAGTGTCACAAGGTCACAGTTCATTTTCATCTCCAGTTTACTCTCCTGACACCATCATTGCATATGCAGCTCATTATTGGCCAAAGTAGCACCACACAGTACACAAGGACATTATATGCATTTAGAGAAGCATTCAACAAGACTCTGTGTCACGCAGATAATCAAGATAAACAGGACTTGAGGAATCCTCAACTGCGTGATAAAATTCAAATACTTCAGTCCTAAACCTAATAATTTAGGTTAGAACAAGGCAAATATATCCACTTTACATGCTATTCGTCTTTAAGGAAATATTAATTATTGCGTCCGGATAAATAAATTAGAGAATAAATTGATAAGCTACCTGTATTTGCTGATGATATGACATTGACCTCTGTAGGCAATCACATGCATTTGTTGTACATAAATATACACATACACAGGAAGACGCACATGAAGTAAAACAAGTAAATCTAACTTTAGAAATCTAAAGCAATAGAACACAAGCTAGTTAACGTGGTGATATGGTCCTTTAATCCCAGTACTCAAGAGGCAGAAGCATGTGAATCACTGTGAGTTCAAAGCTAGCCTGCTCTCCACGTTGAATAAATAAAACTTAACAGAATGTACTATCTGTGTGTTGGTAGCAATGCTGATGTAAGCAGTCCTGTGCTGCTAGAAGTATAAAAGTATAGTTTTAGAATTATTACAGTACAGAATATTTGACAGTAGCAGTGACGTGAGTACCGTGCTTTAGGTTTGCATTTTAATACCGTGTGTTAAAGAATGCTTGTACTTACGGGAAGGAAGGTTGAGGAGGTGCTGTGACACTGGCAGCAGTCACATTCCTCTCATGTCTGCTGTATCTTTTGATTGCATCAAGACACATGGCCCATCAAGCGGACCATCTACACCATCTAGATTTGTGTTGCGTATCCTCTGGGAGGCTTACATGAGGATGACCTCCCTTAGGCCACATTTCCCAGACCAGGTCCCTGTCATTAAGTGATGCATTTCTATATCAAGTGCTATATTAAGAGGAGGGCTGTGGATTGTGAGAGCCAGTCAGGAAAAGATGCAACAGAGGAGTTACCTGCACTGCGTTGGAAGGCCGGTAAGATTCCAACAGGTAGGAAAGAGAAGTTAATAAATCCAAAATGAAAAAGAATGGCAGAAGCACCATAGTTTATGAGTCATATGTGGGTAAGTATGTATGTATATATTATGTATGTGTGTGTGTATGTATGTATGTATGTATGTATGTATGTATGTAGTCCATTATATACCAGGCTATACTTGTCAATTTGTCCTTCTCTTTTTGTTATTTTGTCTTTTTTTTTTCAGAGCTGAGGACTGAACCCAGGGCCTTGCGCTTGCTAAACAAGCACTCTACCACTGAGCTAAATCCCCAACCCCTCAATTTGTCCTTCTCTAACCCCTCTACTGGTTACTCTTAGCTCTTATCTCCTTAGGTGACCTTGTTTCATCCTTTTGTTCACTCCGGATGATGAGTACACATCCAGTATCTTATAAAGTGTTTATTTTCCATTTCTTCTTTCTTACTAATATCTATAGACTTATAGTATTTATTTAGGTAACAATAACACTCTTCTTATAAGTTTAGTCTGAGTTAATCACACCTAACACTGGCAATTTCTGCTTTTCTTCCAG
Seq C2 exon
GATGTAATAGCAGTCTTCAAACCACAAAATCAACTCAAACTAAAGAGTCATCATTTCAGGAATTAAAGAGGAAACAACTCAAAAGGGATGAGGACTGGGACTTTACCTCAGGAAAATCCTGCAGACCTGACAACAGTTTTAAAAAACAGAACAAAAATGAAAGCTTACAAATAATTTCTATCACCCATACAAAAATTCTTACTGTAGATAAAAGCCATAAGAATTTTGAGTTTGGTCCAAGTGTCAGCCTGAAGTCAATCAGTAAGCAAAAGATTGCTAGAGAAAAAACACAAAGAAATAGCCTCAAGGAAAATTCAACTTCACTTAATCAACCAAAAATCAAGACATTAGAGAAACGCTTTAAATGTAGTACTTGTGAAAAGGCCTTCATTCACAGCTCATCCCTTCGCAAACATCTGAAAAACCATAGTGGAGAGAGATTATTTCAATGTAAAGACTGTTTGAAAGCTTTCAGCCAAAGTTCCGCTCTTATTCAACATCAAAGAACTCATACTGGAGAGAAGCCCTACATATGTAATGAGTGTGGGAAGGCCTTCAGCCACAGTGCATCCCTTTGTAAGCACCTAAGAACTCATACTTTGGAGAAATCCTATACATGCAAAGAATGTGGAAAATCTTTTAGCAGAAGGTCTAGTCTTTTTTTGCATCAAAAAATCCATGCCCGAGAAAACCCTCATAGATATAACCCAGGAAGGAAGGCATCCGCTTCGCTCTCAGGATGCCAGAGAGCTCATTCCAGGAAGAAGACCTACTTGTGTAACGAATGCGGCAACACCTTCAAGTCTAGCTCCTCCCTCCGTTACCATCAGAGAATCCACACTGGAGAGAAACCTTTCAGATGTAGTGAATGCGGCAGAGCCTTCAGTCAGAGCGCATCACTTATTCAGCACGAAAGAATCCACACGGGAGAAAAGCCCTACAGGTGTGGCGAGTGTGGAAAAGGCTTTACTTCTATCTCAAGACTCAATAGACACCGGATAATTCATACAGGAGAGAAATTGTATAATTGCAATGAGTGTGGCAAAGCCTTAAGTTCCCACTCAACTCTTATTATTCACGAACGAATCCACACTGGAGAGAAACCATGTAAGTGTAAAGTTTGTGGGAAAGCCTTCAGACAGAGTTCAGCTCTGATCCAACATCAGAGAATGCACACTGGGGAAAGACCCTATAAATGTAACGAGTGCGGGAAAACATTCAGGTGTAACTCATCCCTAAGTAACCACCAGCGAATCCACACTGGAGAGAAACCTTATCAATGTATAGAATGTGGGATGTCGTTTGGACAAAGTGCAGCTCTTATTCAGCACCAGAGGATTCACACGGGAGAGAAACCCTTTAAATGTAACACCTGTGGGAGGAGTTTTAGGCAAAGCTCCTCCCTTATTGCCCATCAGCGGATTCATACTGGAGAGAAACCCTATGAATGTAGTGCATGTGGAAAGCTCTTCAGTCAGAGGTCCTCCCTTACCAATCATTATAAAATTCACATTGAAGAGGACTCCTTGAACATAGATTTGCATGAGTAAAAGCAATTGACCAAAGTTCTTCAGAGGATATATACTTCATATTGACAATAAATATAGTGAATATAAGACAACTTATTTAGCCCTATGAGATATTAAAATTGCAAGAATAAACTGTGATCATATAATAACAGAGAAAATTTCACACCTGTCAGTCACATTTTGTGATCAGATACTTTACCATAGCAGACATTGACAATGGCCATTTATAAGGTAACAGAAATGCTTTTTTATTTTATCCACATTATATAATATATGCAATATATAAACACTAGAAAGATCTGAGTTCTGGAGTGTTAGTTTGTCATTAGAAAAAGGAGTATCACCTATTAGCATATTTACTACAGCTAATATTTTAATAGTAAACCATTAAAATATATGCATTTTTAAATCAGTGGACCAAATTAAACAAACAAAAACCAAAATACTACCTCATACTATCTTTTCCTAAACTATTGTCAAACTGCATGATTTTTATTAAAGAGGAAGAAAGAGAACTGTTTTAAATTTTCATTCTTCTAATTTTCTAACTGCCCTACACTCCTCCCACACTTAATACACATAATCTAATTTTGTGCTGTGAATGAATTATTCTCCTTCATTGCCTTGAAACATTTATTATGTCCTGAGTGGTAATGTTAAATACTAGTCTTAGCCACCCTGGAGCAAACAGACTAGCTAAGCTTGCCAGAATGAGTTGAAAGAGAACAATGAGGGATGGCAGTTGACATCAACCACCCCCAGCTTACATCATACAGATGAACCCCCAAACGTGCACACCACACGCAGACATACGTGGAGCAAATTCCCATTTTCCGGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029678:ENSRNOT00000004902:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.280 A=NA C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF0009621=zf-C2H2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]