MmuINT0179075 @ mm10
Intron Retention
Gene
ENSMUSG00000020335 | Zfp354b
Description
zinc finger protein 354B [Source:MGI Symbol;Acc:MGI:1351476]
Coordinates
chr11:50921823-50928659:-
Coord C1 exon
chr11:50928564-50928659
Coord A exon
chr11:50923841-50928563
Coord C2 exon
chr11:50921823-50923840
Length
4723 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
AATTTTGGTTTTGCTTCCAGGAT
3' ss Score
8.51
Exon sequences
Seq C1 exon
GATTCCCATTTACCAAACCAAAGATGATCTCCGTGTTGCAACAAGGAGAAGAACCCTGGAAATCAGAGAAAGAAAGTCATGGATGCTCCCCTCTTG
Seq A exon
GTAAGTGGGTGGGCCTGAAATACCCCAGAATCGCTGCAAAATAAGAACAGAGGGGTAGCCTCGGTGCCTGGAGACCGAGCTGTGCCAGCAAGTTGCTTTTCAGTGACAGGAATCCTAGGGGGAGGACCAAGGGATGACAGGAATCCTAGGGGGAGGACCAAGGGATGAGAAGATAAAGGAGATAGGAAGGCTGGGGTCAGGAATGTCTTATTCCAAGCAAGTTTATTAGGAAATACGGCATCTTATGTGTACCGTCTGTGGGGAAAATGGGACAGAGGGAGCAGACAGCTATGACACAGTGAGATGGAGTCAGCGGGAAGCTAATTGAGCAATTTGCACAAGGGGAATGCAGGGTATCTTAAGAAGGTCACAGATTGAGTGCACAGCGACCTTGGGGCTGAGAACCACAGCCCCCTTGGGGTTAGAAGAACTGGCTTCTCCATATCTGAAGCTGATGCTCTGCCAAAGCCCGGACCCCAGGCCGTTACCGGCTCTGCCAAGCACTTCAGATAAGGGACTGTGTTCCTTTTCCATACATCAGGGTCTCCAGAAAGCCTTAGACTGGACTGTCCCTCAACAAGAGACCTCTTCAGGTACCTGATCCTCATGGAATGATGGGAAAGGAAAATCCCAGGCTCCCAGCCCCTAGCTTCCCCTCCTGTCTATGGTCCCTTTTGTTTCTGAGGAGAGCTGCCTTTCATGTACAAGAAGTCAGCATATTTAAGGGTATATTGGAAGTAATTTTTTTTCTAGCTGCACAGAATATATATATATATATATGAAATCGAGACAAAGGAAATGAGCTTGGATGGCCTCACTAGATTTTGGTACTGTGCTAAGAGCTTTAGCCTGTAGATAACAGGGATAGCTAAGAAGTTTAAGGAGAATTTTATGATCCTGGATATTTTAGTGGGGACAACAAGGGAAGCCATTGAGAGGGAGACAGTGGGGGGAGGGGAGAAGGAGCTTGAGCAGGAAGAGAGAAAATGCAGAGGTGGGAGAGGAGAGCCAAACGTCTAGATTCTATAGGGAAGAGCTCCTAGGAGAGATATTAGAAAGTTCAGATAAGCCAGCCTTGCCTGGAACAGGCAGGACTGAGGGATGCTGGGAGAACCTGGATATGCAAGCTAAGCACCTCAGCTGCTTGTCCTGGGTCTGAATCCCAACCCTGAGGAGACATAAACATCCAGAGATGGGTCCAGCACTGTCTCCCTGGGAGAGCAGCTTCCTGCCCTTAACAGGAAGGGTTGAGGGCTTAGAGCCTGGAGTGGGGGAACTGGGAGACAGGGCTGAGGTTGGGTCAGGTCAGACACTGAGGATTAAGGAAGAGCTGGAAGGTTGACTATACGTTGTTCTTATAGACCCTGTTCTGATAGACCCTGAATACAAGAGCCCTTCTTTTTCAGTCTAAAGTGACAGTTTCTGATGTAGAGACCCCGGTTGTCTAGCTTTGAAACCTTTGTTTGGAGAAATACAGTAATTCTGTGGAAACTACCAAGGCAACTGTTTTGTAGTGCTGGAGAGCCAGGCCTTGCACTTGCTAGGCAGGTGCTCTACCAGTGAGTTACACTTCCAGCCATATCCTTTCCTCTGAAGGGACCTATTTTCCTGTTTGTCTTCTGCCTTGTGATATTAAAAACAAACAAACAAACAAAAAACCTGTTTTTATTTTTATGTGTTTGGATGTTCTGCCTGCAAAAATGTCTGCGCACCACATGGGCACAGGGCTCACAAAAGCCACAACAGAGTGCTAGTTCCCCAGGGACTGGAGGTTTAGACAGTTGTGAGCTGCCAGGTGAGGCACTAGGTACTGAATCCAGAGCTTCTGAAAGAGCATCCAGCGCTCATAACCACTGAGCCCTCTCTCCAGTCCCCTGCCTTGTCCTTTTTTATTAAAATGTAAACATCCGAATCTTCCACTTCCCAGGGTCTGCTGGGGTGATGGGTGATTTTTCTCTTTAGTTGTTATAAGCGACGAACCTGTCTGGTTTTAAAAATCAAGGCAGAGGCAAGTAAAGGGGGAAGGACACTGTCCCCCTAACGGTTGGGTATCCGCTCCTGCCAGAGGAGATAGGAGTGGTGCCCCGCCTTTGTAGCTGTCCTTCTTGCCTCTTGGCTGTATGGCTGTTGTAGGGATGCTAGCAGGTTGCTCCTTGGAGCTGGCTGCTGCTGAATGAAATGCACTTCAGTTTACCACTCAGGCCTTCCTGTTGATGCTGCACAGGCTCCGGAGTTTTGAAATCTAATGGACAGATTTTACAGGTACACTTGCCATCCAGGGAGGGAAATAAAATCATGGTACTTCACACCATGAGAGATGTCATATTGTCTGACGTTCACGTTTTCTCTTCTACACTTGTTTTACAGTCTGGGCATTCTCTGCCTTCACATGATGCTGAGATTGAGGTCTTGCATGAAGTGAAGACTACATAGTTTAAAGCTGTTTGCTGGGGCAGTCTCTTAGCTAAGTTCTAACTTAGCCTGCCTTCCTGGCCTGGATCCCCGCCATGTGGCTAGCTCTTTACCTCCTGCCCCACTTTAGTCTTCCTTCTGCTTTCTCCCTGCAGGTCTCAATTTTCTTGACTCTGCTTGCATCCCTGCAGCGTCCCCACCTGCCTGGAAGTTCTGCCCCCTTACATGCTGCCCCAGCCATTGGCTGTCAGCTCTTTATTATAACCAATCAGCAGTAAGACAGCATCTGGTCCATCCCTTTGGTTGCCTTAGGCATTGTGGGCTATCTGACCTTCCTCTTTTGGGCAGGTGGGATGGGCAAGCATTTACAAATAGAAAACCTAGAGATAGGACAAGGAAATGACAACACTCAAATTCTGCCAGGACATAGCTCTCTGCCAGTATATAGTAACAATCAAAAATGCAGAGGCACACCTTATTACAATGTGAGGAAAGGTCACCCCAACATAGTCCCAAAGAAAAGAGAATTATCTGGCCTTGGATGTCATCTGCTACTGAGAAATTCTGAGCTATATCCCGAATTTTGTGGCATTTTCAGAACACTGGGTTGTAACATCCAAGAGTAGCATTTTCATTCAAGATGCCTATAAAAATTTACTCATATAGTTTTTCAAATTTTCTGTATTCCTCTTATTCTTTATAACAATACTCTTGTGTGCCAATTCTATATATGCTTCTTCATGAAATCAGTTTTAAGAGATGTGATATCATCAGCAAATACAGGCAGTTTTTCAACTTCTCTAATTTAATTGCCCGACTGCAATAATTAATAGTTCCTTACAGATGGATAGTAGGGAAATGGATATATTGGCTTCATTCTTGATTGCAATGAAATATACCTAATGTCTCTTCATTAACAAAATGATTGGCTTTAGGACTAAAATGTTTGAATTTTATCATGCCGTTGAGGTATTCCTCAAGTCCTGTTTATCTTTATTATCTGTGTGACACAGAGTCTCATTGACTGCTTCTTTAAATACGTATAATGTACTTGTGTACTGTACAATAATATTCTAGCAAATGATGAGCTGCATATACAATGGTGTGCCATGAGATTATAACACGGATAGCCAGTTAAGAGCACTTGTGTCCTGGACACTCACAACACCATGTGATTCACAATTGTCCATAACTCTAGTTCCAGAGACTCTGATGTTCTCTTTTGACCTCTGCAGGTGATTAGTATGCATTTCTGTACATACAGATGCACATACAAGAAGACACACAGAAAGTAAGACACAGAAATCTAACTTTAGAAATGTAAAGCAGCAGAGTGCAAGCTAATTAAAGTGGCCACGTGCTCCTTTAATCCCGGTGCTCAAGAGGCAGAAGCATGTAGATCTGTGAGTGCAAAGCTACCCTGCTCTCCACACTGAATAAATAAAACTTATCAGAATGTACTATCTATGTGTTTGCAGCAATGCTGATGTAAAAAATCCTGTGTTGCTAGAAGTATAAAAGTATAGTATTAGAATTATTACAGTATATAATATTTGATAATAGCAGTGACTTTAGTCACTGTGCTTTGGGTTTGTATTTTAATGCTGTGTATTAAAGTCTGCTTGTCCTCATGGGAAGAAAGCTTAAGGAGGCGCTGTGATGCGGGGGGGCAGCAGCCGCATACCCCTCATGTCTGCCATATCTTTTGATTGCATCAAGACACATAGCCTGTCATATGGGCCGTCTACACCATCTAGATTTGTGTCACATATCCTCTCGGAGGCTTACATGAGAATGACCCGCCACATTTCCCAGAGCACATCCTTGTCATTAAGTGACGTATTGCTGTATCTTGTAATAAGTGCTAGAATAAGAGGAGGGCTGTGGATTGTTAGACTCAGTCAGGAAAAGATGCAACAGAGGAGTTACCTGCACTGCATTGGAAGGCTGGTAAGGATTCTAACATGTAGAAAAGAGAGGTTAATAAATCCAAAATGAAAAAGAATGGCAGAAGCACCATAATTCATGAGTTCCATAGTTCCATACCAGGCTACACTTCCCAGTCTGTGCCTCTCTAACCCTCTCCTGGTTACTCTAGCTCTCACCTCCTTAGGTGAGCTTGTTTATCCTTTTGTTCACTCCAATTGATTGGCACTCATCCAGTATCTTATAAAGTGTTTATTTTCCATTTCTTCTTTCTTGCTAATATCTATAGGCATGTAGTATTTAATTAGGTAACATTAACATTCTTCCTATAAGTTTAGTCTGAGCTAACCACATCTATCACTGGTAATTTTGGTTTTGCTTCCAG
Seq C2 exon
GATGTCACGGCAGTCTTCAAACCACAAAATCAACTCAAACTAAAGAGTCATTGTTTCAGGAATTAAAGAGGAAACAACTCAAAAGGGATGAGGCCTGGGACTTCACGTCAGGAAAATCCTGCAGACCTGACAACAGTTTTAGAACACAGGATACAAATGAAAGCTTAGAAATAATTTCAATCAACCATACAAAAATTCTTACTATAGATAAAAGCCGTAAGAATTTTAAATTTGGTCCAAGCGTTGGCCTGAAGTCAATTGGTAAGCAAAAGATTGCAGGAGAAAAAACACAAAGAAATAGCCTCGAGGAAAATTCAACTTTACTTAGTCAACCAAAACTCAAGACAGTAGAGAAACGCTATAAATGTAGTACTTGCGAAAAAGCCTTCATTCACAACTCATCCCTTCGCAAACATCTGAAAAACCATACTGGAGAGAGACTATTTCAGTGTAAAGACTGTTTGAAAGCTTTCAGCCAAAGTTCTGCCCTTATTCAACATCAAAGAACTCACACTGGAGAGAAGCCCTATATATGTAAAGAGTGTGGAAAGGCCTTCAGCCATAGTGCATCCCTCTGCAAGCACCTAAGAACTCATACTTTGGAAAAATCCTATACATGCAAAGAATGTGGAAAATCTTTTAGCAGAAGGTCTGGCCTTTTTTTGCACCAAAAAATCCATGCCCGAGAAAATCCTCATAAATATAACCCAGGAAGGAAGGCATCCACGTCCCTTTCAGGATGCCAGAGAATTCATTCCAGAAAGAAGACCTACTTGTGCAACGAATGTGGCAACACCTTTAAGTCTAGCTCATCCCTTCGTTATCATCAGAGGATCCACACCGGAGAGAAACCTTTCAAGTGCAGTGAGTGTGGTAGGGCCTTCAGTCAGAGTGCATCACTTATTCAGCATGAAAGAATCCACACTGGAGAAAAGCCCTACAGATGCAGTGAGTGCGGGAAAGGCTTCACTTCCATCTCAAGACTCAATAGACACCGAATAATTCATACGGGAGAGAAGTTTTATAATTGCAATGAGTGTGGCAAAGCCTTAAGTTCCCATTCAACTCTTATTATTCACGAAAGAATCCACACTGGAGAGAAACCGTGTAAATGTAAAGTTTGTGGGAAAGCCTTCCGACAAAGTTCAGCTCTGATCCAACATCAGAGAATGCACACTGGAGAAAGACCCTATAAATGCAATGAGTGCGGCAAGACCTTCAGGTGTAACTCATCCCTAAGTAACCATCAGCGAACCCACACTGGAGAGAAGCCGTACCGATGTCAGGAATGCGGGATGTCATTTGGACAAAGTGCAGCTCTTATTCAGCACCGAAGGATTCACACTGGTGAGAAACCCTTTAAATGTAACACGTGCGGGAAGAGTTTTAGACAAAGCTCCTCACTTATTGCCCATCAGAGGATTCACACTGGAGAGAAACCCTATGAGTGCAGTGCTTGTGGCAAGCTCTTCAGCCAGAGATCCTCCCTAACCAATCACTATAGAATTCATATCGAAGAGGACGCCTTGAACATAGATTTGCATGAGTAAACAATGAACCAAAGTTCCTCAGAGAATATATACTTCATATTGACAAGAAGTATAGTGACTATGAGGAAACTCTTATTAATTTAGTCCTATGGGATGTTGAGAATGCAAGAATAAAACTGTGGTCATATAATAATTAACAGAGAAAATTTCATACCTGCCAGTCATTTTTAAGACCAGACACTTAACTGTAGCAGACATTGACAATGGCCATTTATAAGATAACAGAAACACCTTTTTATCTCATCCACATAATATATATGCACTATAGAAACACTAGAAAAATCTGAGTTCAAGAGTGTTGATTTGTCATTAGAAAAAGGAATACCAGCTATTAGCATATTTACTACATGTAGTATTTTAATAGTAAATACTTAAAATATATGCATTTTTAAATCAATGGGCAGAATTAAAGAAAGGAAAACAAAACAAAACAAATAAACTACCTCGTACTGTCTTTTCCTAAGCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020335:ENSMUST00000109124:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF0009621=zf-C2H2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types