RnoEX6004679 @ rn6
Exon Skipping
Gene
ENSRNOG00000027505 | Abca15
Description
ATP-binding cassette, subfamily A (ABC1), member 15 [Source:RGD Symbol;Acc:1305981]
Coordinates
chr1:190079490-190094518:+
Coord C1 exon
chr1:190079490-190079617
Coord A exon
chr1:190081796-190081946
Coord C2 exon
chr1:190094259-190094518
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTTCTTATTGCTCCTCCTAGATA
3' ss Score
7.65
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
TTATAGGGTTTCCTTCAGAAAGTGATTTTGAAGATTACGCTAGGTCATCTGTCAACTCTAGAAATATTCTGGCTGCTATTGTGTTTGACCACAACTTCGCAAACAGTAGAGACCCTCTGCCAAAGAAG
Seq A exon
ATAAAATACAATCTGCGATTTAGTGATATTAAAAAGAACATACATGGTATGGCATATTATCAAGGGCACACCTGGCTTACAAAATTTCTCTTTCCACCTTTGCGTATTGTGGGACCCAGAAATCCACAGGAAGCAGATGGAGGCAGTCCTG
Seq C2 exon
GGTACATTACTGAAGGATTCCTGGCTGTGCAACATGCCCTAGACAAGGCCATCATGCTCCACCATGGTGGAGCTGCTGCAACGGCACTCTTCAATGATGTTAGCCTTTTCATTCAGAGATTTCCATACCCTGCATATTATCATGATCACTTCTATTTGTTTGCTAATACTTTTGTCCCTCTAACAGTGGCAAGTATCTTCTTTTTGAATCATCTTATCTTAGTTTGGTCCATTGTGTGGGAAAAGGAAAACCGATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027505-'4-4,'4-3,5-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(9.5=100)
A:
PF126982=ABC2_membrane_3=FE(11.3=100)
C2:
PF126982=ABC2_membrane_3=FE(19.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTGACCACAACTTCGCA
R:
ACTTGCCACTGTTAGAGGGACA
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]