RnoEX6005223 @ rn6
Exon Skipping
Gene
ENSRNOG00000029945 | Cuzd1
Description
CUB and zona pellucida-like domains 1 [Source:RGD Symbol;Acc:619771]
Coordinates
chr1:201887220-201889171:-
Coord C1 exon
chr1:201889021-201889171
Coord A exon
chr1:201888493-201888710
Coord C2 exon
chr1:201887220-201887392
Length
218 bp
Sequences
Splice sites
3' ss Seq
CCAGAGGCTGTCTTTCTTAGCCT
3' ss Score
1.93
5' ss Seq
CTAGTAGGT
5' ss Score
4.34
Exon sequences
Seq C1 exon
CTATTCCAAACTGCGGTGGTTACCTGCAAACATTGGAAGGATCCTTCAGCAGCCCCAATTATCCAAGGCCACACCCTGAGCTGGCATACTGTGTGTGGCACATACAAGTGGAGAAAGGCTATAAGATAAACTTGAATTTTACAGAGCTCTT
Seq A exon
CCTAGAAATGGATGAATACTGCCGATTTGACTTCATCGCAGTCTACGATGGCCCCTCTACCACATCGGGCTTGCTCAAACAGGTGTGCGGCCGTGGGACACCTACCTTTGAGTCTTCCTCTGATGCCATGACTGTTGTGCTGTCTACAGATTATGCCAATTCCTACAGAGGCTTCTTTGCTTCCTACGCTTCAACCTACGTACAAGAGGTCAACACTA
Seq C2 exon
CATCTTTAAGTTGTGCTTCTGACAAGATGAGAGTCATCATCAGCAAGTCATACCTACAGTCACTTAACTACCATGAGAGCAATTTGCAGCTAAACGACCCGACTTGCAGACCGAGTGTATCAAACGTTGTAGAGTTCTCTATCCCTCTGCATGAATGCGGTACAATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029945-'6-9,'6-6,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(42.2=90.2)
A:
PF0043115=CUB=PD(56.9=83.8)
C2:
PF0010018=Zona_pellucida=PU(22.1=93.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAAACTGCGGTGGTTACC
R:
TCATGCAGAGGGATAGAGAACTCT
Band lengths:
302-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]