RnoEX6005461 @ rn6
Exon Skipping
Gene
ENSRNOG00000018978 | Scart1
Description
scavenger receptor family member expressed on T-cells 1 [Source:RGD Symbol;Acc:1307378]
Coordinates
chr1:212700045-212701480:+
Coord C1 exon
chr1:212700045-212700353
Coord A exon
chr1:212700730-212701035
Coord C2 exon
chr1:212701163-212701480
Length
306 bp
Sequences
Splice sites
3' ss Seq
TGACATGGCCTCTTCTGCAGAGT
3' ss Score
7.4
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GACACGTAGAGGCCCGGCTGGTGGGTGGAGACCATTCCTGTTCTGGACGCCTGGAGGTTCTTCGGGGACTGACCTGGGGTACCGTCTGCCATGCTGATCTGGACTTGCCCACAGCCCATGTGATCTGTCGGGAGTTAGGGTGTGGTATGGCTGTGTCCACACTTAGGGGTGCCCAGTTTGGCCAGGGCTCGGGGCCTGTGTGGCTAGAAGCCTTCCGCTGTGTGGGGAATGAATCGATGCTGTTCCACTGCCCTCAGGAGCCTGGGCACCACTGCGGCCACAACCAGGATGTTGCACTCACCTGCTCAG
Seq A exon
AGTTCCGGCTAGTCAATGGTAGCAGTGACTGTGAAGGCCGAGTGGAACTCCAAGTGCAAGGGGCCTGGGCACCCCTCTGTGCTGCCAACTGGGACCTAGCAGACGCCATGGTTCTCTGTCACCAACTCAACTGTGGCAATGCAGTATCCATACCCCCAGGAGGACATTTTGGTGACGGGGATGCCCCCATCTGGCCAGATGTATTTCATTGTGTGGGGACAGAGCCCCATTTGCTTCACTGTCCAGCAAGCACCCTGGGGGCCCACAGTTGTGTCCTGGGAAATACAGCTTCCACCATCTGTTCAG
Seq C2 exon
GACTCCAAGACACCCTGCGGCTGAGAGATGGACAGAGCTACTGTGATGGCCGCGTAGAGATTTCCCTGAATGGTTCATGGGGCCGCGTATTGGATGACATCTGGGACATACGTGGTGCCAGTGTGGTGTGCAGGCAGCTAGAGTGTGGAGAGGCACAGGGAGCTTATGATGCTCCAGCTCCTGGCTTCAGGACAGCCCCTGTGGGGCTGAGCCAGGTGCGCTGCCTGGGCTCTGAGACTCACCTGATGCAGTGCAATGTTTCTACCTCCCTGCTGGTGCCTGCTGCGACCTTGCGTGATGCAGGAGTGGTATGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018978-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.3)
A:
PF0053013=SRCR=WD(100=95.1)
C2:
PF0053013=SRCR=WD(100=91.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCCATGCTGATCTGGAC
R:
GCACCACGTATGTCCCAGATG
Band lengths:
344-650
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]