HsaEX0054366 @ hg19
Exon Skipping
Gene
ENSG00000214279 | RP11-108K14.4
Description
Putative scavenger receptor cysteine-rich domain-containing protein LOC619207 [Source:UniProtKB/Swiss-Prot;Acc:Q4G0T1]
Coordinates
chr10:135270783-135273674:+
Coord C1 exon
chr10:135270783-135271079
Coord A exon
chr10:135272525-135272830
Coord C2 exon
chr10:135272991-135273674
Length
306 bp
Sequences
Splice sites
3' ss Seq
TGACTCCTCCTCTCCCCCAGAGT
3' ss Score
9.67
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ACGGCACTTTCCGGGAGCTCCGGCTGGTGAAGGGCCGCAGTCCCTGCGCGGGACTCCCCGAGATCAGAAACGTGAATGGGGTGGACCGCCTCTGTGTCCTGCATGTGGAGGAGGCCATGGTGTTCTGCCGGGAGCTGGGGTGCGGCCCTGTGCTCCAGGCCCCCCGCCGGGACGTGGGCGTCGTCAGGAAGTACCTGGCCTGCAGGGGTACCGAGCCCACCATCCGCAGCTGCAGACTGGACAACAACTTCCGCAGCGGCTGCGACCTGCGGCTGGACGCAGAGGTGGTCTGCTCAG
Seq A exon
AGTTCAGGATGGTCAACGGCAGCAGCAGCTGTGAGGGCCGCGTGGAGTTCCAGGTGCAGGGGTCCTGGGCACCCCTCTGTGCCACCCACTGGGACATAGCAGATGCCACCGTCCTCTGCCACCAGCTCAACTGTGGCAACGCGGTGGCCGCACCTGGAGGAGGCCATTTTGGGGACGGGGACGCTGCCATCTGGCCTGATGCCTTTCACTGTGAGGGGACAGAGTCCTACTTGTGGAATTGCCCAGTAAGCACCCTGGGGGCCCCGGCCTGTGCCCCGGGAAACACAGCCTCCGCGGTCTGCTCAG
Seq C2 exon
GTCTGGCCCACGCCCTGCGACTGAGGGAAGGACAGAGCCGCTGTGACGGCCGCGTGGAGGTCTCCCTGGATGGCGTGTGGGGCCGCGTCCTGGACGATGCCTGGGACCTGCGCGGCGCGGGCGTGGTGTGCCGGCAACTCGGGTGCAGAGGGGCCCAGCAAGCCTATGACGCACCTGCCCCCAGCCGCGGATCCGTCCAGGTGGCGCTGAGCCGCGTGCGCTGTCTGGGCACCGAAACCCGCCTGACTCAGTGCAACGTGTCCGCGACCCTGCAGGAGCCCGCGGGGACCTCGCGGGACGCCGGCGTGGTGTGCTCCGGTGAGGTCGGAACCGCGTCCCCCATGGCCCGTCGCCACGGGATCCCGGGCGCCCTGACTCTGTCTCTCCACAGGGAGCCTCAGGGTGCGGCTGGCCGCGGGGCCGGGGCGCTGCACGGGGGCGCGTGGGGCACCGTGTGTGACGATGCCTGGGACCTGCGGGACGCGCACGTGGTCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214279_MULTIEX1-2/10=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACTCCCCGAGATCAGAAA
R:
CCCAGGCATCGTCCAGGA
Band lengths:
353-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)