HsaINT0094772 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr10:135270783-135273308:+
Coord C1 exon
chr10:135270783-135272830
Coord A exon
chr10:135272831-135272990
Coord C2 exon
chr10:135272991-135273308
Length
160 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTGTGCGTCCCCATCCCCAGGTC
3' ss Score
10.94
Exon sequences
Seq C1 exon
ACGGCACTTTCCGGGAGCTCCGGCTGGTGAAGGGCCGCAGTCCCTGCGCGGGACTCCCCGAGATCAGAAACGTGAATGGGGTGGACCGCCTCTGTGTCCTGCATGTGGAGGAGGCCATGGTGTTCTGCCGGGAGCTGGGGTGCGGCCCTGTGCTCCAGGCCCCCCGCCGGGACGTGGGCGTCGTCAGGAAGTACCTGGCCTGCAGGGGTACCGAGCCCACCATCCGCAGCTGCAGACTGGACAACAACTTCCGCAGCGGCTGCGACCTGCGGCTGGACGCAGAGGTGGTCTGCTCAGGTGAGGCTGCCACCTGATGTTCCCAGTGACCCTTGGGATGATGCTGGGCCCGGACCTGGGGAGGGCAGGGAGAAGGGGGGTGGGCGTTCCCACGGATGGGCCCCCCTGTCCTGCATGAGACATTGGGCGCAGAGGTGGGAAAGGGCCTCAGCTCTCACGCTGGTTCTCAGCAGAGTGGAGCTGAGTTTCTGGTGGCCCCACAGAGGTGTCCTGGCTCAGAACCCGCAGGCCATCTAGGGGTCCTGGCTGCCGCTGCAAGTCTGAGCTGCCTCAGCTGTGATCTCTGCATGTCTAACATGGATCGGGGTTGGGTAGAGGTCACTTCTTCCCAGCCCTGCCTCAACTGTGTGTGAGCTGCACTGGCCTCACAGCTCCTGGCCTTGTTGTGCATATGAGGAGCAGCTGAAATGAGGTGGATAGTCTGCCTGCTGCGGTACCCCAGAGAGGGTGGTGCTCAGTGGACCAAGGGGTGCCCTGACCTCGCCTCTGGGATTGCAGAGGGTGTTGCTGTCATGGCCTCGGACAGGCAGAGGCTGTGAAATACGTGAGCACCTGCAGCAGGTGACCCTGACCCTGACCTTGGTGATGCGGCCAAGGACGTCTGCTCTGCTCTGGGTGCCGGGTGGAAGGGCCTGTGGCTGCAAGTTCCTGCCTGTGCTTGGTAGACCCTCTGCCTAGATGCAGGTGATGGCTCCTGGCTGAAGCCTTCCGCAGTCTGAGGCTCAGGGCCAGGCTGTTGACCTGAGAACACCTGTCTCCTGCCTGAGAGGACGTCTGCCCCCAGGACACACCGAGGCCCGACTGGTGGGCGGCGAGCACCCCTGCGCCGGGCGCCTGGAGGTGACCTGGGGCACCGTCTGTGATGCGGCCCTGGACCTGGCCACGGCCCACGTGGTGTGCCGGGAGCTGCAGTGTGGGGCGGTCGTGTCCACGCCCGAGGGCGCCCGCTTCGGCCGGGGCTCGGGGCCGGTGTGGACGGAGGCCTTCCGCTGTGCGGGCAACGAGTCGCTGCTGTTCCACTGCCCACGGGGGCGTGGGAGCCAGTGTGGGCATGGTCACGACGCGGGGCTCAGGTGCTCAGGTGAAGTCCTGTGTGTGGGCTCTGAAGGCTCAGCCCTGCCTTGTTCTCTGTCAAATCCCTTCGTGCCCTAAAGGTGCCTCTGGCCAGTAGGTGTGGGTGCTTTTGATGTTTGCTTCTGTTGGTTGAAAGAAGCGCAGGGAAGAGACTGGGTGTAGAGTGATGTACCCCAAGGCTGCAGCTAAGATCAAATTCTTCTGGAGAGCTGTGTGAGCTGGATGCTGATGCAGAGGAGGGTGGGGGAGCTGGTGAGACCAAGGCTGGGCTCTGTGCCCATCCCACTGGGTGTGAAGGAAGGAAATGACCACAGACAGCCATGTTCTGGGTCGGCCGTCTGCAAGCCAGGCTGACTCCTCCTCTCCCCCAGAGTTCAGGATGGTCAACGGCAGCAGCAGCTGTGAGGGCCGCGTGGAGTTCCAGGTGCAGGGGTCCTGGGCACCCCTCTGTGCCACCCACTGGGACATAGCAGATGCCACCGTCCTCTGCCACCAGCTCAACTGTGGCAACGCGGTGGCCGCACCTGGAGGAGGCCATTTTGGGGACGGGGACGCTGCCATCTGGCCTGATGCCTTTCACTGTGAGGGGACAGAGTCCTACTTGTGGAATTGCCCAGTAAGCACCCTGGGGGCCCCGGCCTGTGCCCCGGGAAACACAGCCTCCGCGGTCTGCTCAG
Seq A exon
GTGGGTGCAGCCAGGACGGTGGACCAGGAGGGTGAGTGAGAGGCATGGACAGAGGAGTGCAAGGAAGGACAGAGGGGGCGGAGAGGTACGGGCCCTGCTGGGGGGTGGTCCTGGGTCCCTCCCGCTGACATCTTGGGCCCCTGTGCGTCCCCATCCCCAG
Seq C2 exon
GTCTGGCCCACGCCCTGCGACTGAGGGAAGGACAGAGCCGCTGTGACGGCCGCGTGGAGGTCTCCCTGGATGGCGTGTGGGGCCGCGTCCTGGACGATGCCTGGGACCTGCGCGGCGCGGGCGTGGTGTGCCGGCAACTCGGGTGCAGAGGGGCCCAGCAAGCCTATGACGCACCTGCCCCCAGCCGCGGATCCGTCCAGGTGGCGCTGAGCCGCGTGCGCTGTCTGGGCACCGAAACCCGCCTGACTCAGTGCAACGTGTCCGCGACCCTGCAGGAGCCCGCGGGGACCTCGCGGGACGCCGGCGTGGTGTGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
-LOC619207:NR_002934:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATAGCAGATGCCACCGTC
R:
GGCTCTGTCCTTCCCTCAGTC
Band lengths:
253-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)