BtaINT0002217 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5E5D7]
Coordinates
chr26:25717703-25718464:-
Coord C1 exon
chr26:25718155-25718464
Coord A exon
chr26:25717795-25718154
Coord C2 exon
chr26:25717703-25717794
Length
360 bp
Sequences
Splice sites
5' ss Seq
TGGGTCAGC
5' ss Score
2.48
3' ss Seq
CTGAGCCGCGTGCGCTGTGCGGG
3' ss Score
-10.92
Exon sequences
Seq C1 exon
AGTTCCGGCTGGTCAACGGCAGCAGCGCCTGTGAGGGGCGCGTGGAGCTCCAGGTCCAGGGGGCCTGGGCGCCCCTCTGCGCGGCCCACTGGGACTTGGCAGACGCCACGGTCCTCTGCCACCAGCTGGACTGTGGGAACGCGGTGGCCACACCCCCGGGGGGTCACTTTGGGGGCGGGGCCTCCGCGCCCTGGCCGGACGAGGTGCACTGCGTGGGGACAGAGCCCTACCTGTGGAGCTGCGCCGTGAGCACCCTGGGGGCGCCCGCCTGTGGCCCCGGCGACGCAGCCGCCGCCGTCTGCTCAGGTGG
Seq A exon
GTCAGCACGAGCGCGGCCGGAGGGGAGGCCGGGAGCGCACAGGGCTGCGCCGGGAGGCGGCGTCCTCGGCCCGGGACGGGCCGGGTCCCACCCGCCGGCGCGCCGCCCTGCAGTGTCCCGCACCCCGCCCCCAGGTCTCCCCGACGCCCTGCGGCTGAGGGACGGACAGAGCCGCTGCGATGGCCGCGTGGAGGTGTCCCTGGACGGGGTGTGGGGCCGCGTCCTGGACGAGGCCTGGGACCTGCGCGGCGCGGCCGTCGTGTGCAGGCAGCTGGGCTGCGGAGCGGCGGAGCGAGCGTACGAGGCGGCGGCGCCCGCGCGCGGGGCGGTGCCCCTGGGGCTGAGCCGCGTGCGCTGTGC
Seq C2 exon
GGGCACCGAGCCCCGCCTGACGCGGTGCAACGTGTCGGCGGCCGCGCTGGTGTCCGCGGGGGCGTCGAGGGACGCGGGCGTCGTGTGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010522:ENSBTAT00000013918:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=94.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCGGCTGGTCAACGG
R:
GACACGTTGCACCGCGTC
Band lengths:
345-705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]