HsaINT0030817 @ hg38
Intron Retention
Gene
ENSG00000177675 | CD163L1
Description
CD163 molecule like 1 [Source:HGNC Symbol;Acc:HGNC:30375]
Coordinates
chr12:7374831-7375595:-
Coord C1 exon
chr12:7375281-7375595
Coord A exon
chr12:7374924-7375280
Coord C2 exon
chr12:7374831-7374923
Length
357 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTCCTGCACCCTCCACCAGGAA
3' ss Score
9.13
Exon sequences
Seq C1 exon
GATATACAGATGTCCGACTTGTGAATGGCAAATCCCAGTGTGACGGGCAAGTGGAGATCAACGTGCTTGGACACTGGGGCTCACTGTGTGACACCCACTGGGACCCAGAAGATGCCCGTGTTCTATGCAGACAGCTCAGCTGTGGGACTGCTCTCTCAACCACAGGAGGAAAATATATTGGAGAAAGAAGTGTTCGTGTGTGGGGACACAGGTTTCATTGCTTAGGGAATGAGTCACTTCTGGATAACTGTCAAATGACAGTTCTTGGAGCACCTCCCTGTATCCATGGAAATACTGTCTCTGTGATCTGCACAG
Seq A exon
GTAAGAGAATAGTGCTTATGGTTAACTACTGTCAATATAGCCCAGACATGGTAGAGGGAGTTGGGATTAAAGGAAAGATGAGTAAGAAAATGGGGGTGCAGGTGGAGGGGGGATAGGCATGACAGTCAAAGAGTAACATGTAAGAAATAATGATAACTAGGACCATTCCTAAGGGGAAGTTAACACCTCTGTGTTTGGGATTTACGAGTAGACATCATTAATAAAAATGATTTCAATAGACGACAGGGTTTGAAAAGTCCTTATCACAATTGCAGATTCCATGTTGTTACAGAACTCTTCAACCTTTTCCATGTATTTTGGTCTTACTTTTGCCCCATTTCCTGCACCCTCCACCAG
Seq C2 exon
GAAGCCTGACCCAGCCACTGTTTCCATGCCTCGCAAATGTATCTGACCCATATTTGTCTGCAGTTCCAGAGGGCAGTGCTTTGATCTGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177675:ENST00000313599:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAACGTGCTTGGACACTGG
R:
GATCAAAGCACTGCCCTCTGG
Band lengths:
345-702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development