GgaINT1001354 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:615802-617126:-
Coord C1 exon
chrLGE64:616797-617126
Coord A exon
chrLGE64:616111-616796
Coord C2 exon
chrLGE64:615802-616110
Length
686 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGCAGGAAACTTGAGCTCAGCTG
3' ss Score
-6.17
Exon sequences
Seq C1 exon
GCCCGAGGATTTCCAATATTTCCACACTTCGGCTGGTGGATGGTTTGAGTGAGTGTGCTGGGAGGGTAGAGGTGTTTTACAACAATGAGTGGGGGACAGTCTGCGATGACAACTGGGACATGAGTGATGCGGCGGTGGTGTGCCGGCAGCTGGGATGCGGGACTGCGCTGTCAGCCCCGGGATCGGCTCGGTTTGGGTGGGGATACAGCCGCATCTGGCTGGATGAAGTAAGCTGCACAGGGGAGGAAAATGATATCTCACAGTGTGCAGCTAAGACTTGGGGTGTCCACAACTGCCATCATGGAGAAGATGCTGGTGTGGTGTGCTCAG
Seq A exon
GTGAGAGTTGGGGTCGTCAACTCTTATAAGTCTTATAAGAAAGATTGGTCTTATAAGGTCTTATAAGAAAGACTGAGAAAGACATTTTACCAGGGCTTGTAGTGATAGGTCAAGGGGCAATGGTTCTAAACTATAAGAGAGTAGATTTAGGTGGGATAGAAGGAAGAAATTTGGTTACGTTTAGGGTGGTGAGACACTGGAACAAGTTGCCCGGTGAAGTTGTGGCTGCCCCATCATTGGAAATGTCCAGTTGGGTTGGATTTGGTTTTGAGCAAATTGCTCCAGAGAAAAATGTCCCTGCAAGGGTCTAGATGATGTTTGTGGGTCTCCTCTAAGCCAAAACAATTTTATGGCTCCATCTGGAGGGAATGCTGTGCATGGGGCAAGCTTAGGCATGCTCCTTTTGCAGACCTCCCCCATTTGTATCTCCTGCTCTTGGAACCCCCCTGCAGCATCTCTCAGCCACATTTCACACCTGGTAAAATCTGGGGTTTACTCCTGCAATTTATCAGCAGTGCCTATTCAGGGAAAATCCTTTTGTCTTTAATGTTGTAATGCAGGTGCTACCCTGCTGTTTATGTGGGATGCATATGGATGAGATGGGATGGGACTGAAGGAGGTGTTCTGCAATCATGCATGCATGAATTTCCTTGGGGTGTCTGCAAATGCAGGAAACTTGAGCTCAG
Seq C2 exon
CTGATGTACGGCTGGTGAATGGTCCCAGCCGCTGTGCCGGGAGAGTGGAGGTCCTGCACAACGGGCAGTGGGGGACGGTGTGCGATGATGGCTGGGACCTGAATGATGCCAAGGTGGTGTGCAGGCAGCTGGGCTGTGGAACAGTGCTGTCGGCCCCAGTCAGGGCTTACTTTGGGCAAGGCACTGGGGACATCTGGCTGGATGATGTGAGCTGCACTGGGATCGAGGATGCACTCCCGCATTGCCAAGCCCGTCCATGGGGACAGCATAACTGCAACCATAGAGAAGATGCTGGTGTGGTCTGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103:ENSGALT00000014816:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=88.3)
A:
NA
C2:
PF0053013=SRCR=WD(100=94.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGATGACAACTGGGACATG
R:
CCTTGGCATCATTCAGGTCCC
Band lengths:
343-1029
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]