RnoINT0031941 @ rn6
Intron Retention
Gene
ENSRNOG00000010253 | Cd163
Description
CD163 molecule [Source:RGD Symbol;Acc:1310382]
Coordinates
chr4:156764166-156765218:+
Coord C1 exon
chr4:156764166-156764480
Coord A exon
chr4:156764481-156765122
Coord C2 exon
chr4:156765123-156765218
Length
642 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GAAATTTTGGGTGTTTTCAGGAA
3' ss Score
7.63
Exon sequences
Seq C1 exon
GATACATAGATATCCGTCTGGCAGATGGCAAGTCCTCCTGTGAGGGAAGAGTGGAGCTCAAGACACTCGGAGCCTGGGGTCCCCTCTGCAGCTCTCACTGGGACATAGAAGATGCTCATGTCTTATGTCAGCAGCTTAAGTGTGGAGTTGCCCTTTCTACTCCAGGAGGAGCACATTTTGGGAAAGGAGCCGGTCAGGTCTGGAGGCACAAGTTCCACTGCACTGGAACTGAGGAGCATATAGGGGATTGCCCTATGACTGCTCTGGGTACACCGATGTGTTCTGACGGACAGGTAGCCTCTGTAATTTGCTCAG
Seq A exon
GTGAGAGGATGAAGGGCAGAGCCAGTGATAAGCCTCTCCACAGTGGTGTGTTTTAGAATCAGATGGGCCTGAGTCCAGGGATGAAGCAAAAGAAAAATAAACAGTCTGTCTGGGAGATTCATGAGACCTGTGCTAGAATAGTAACTTCATTTGTTTTATTAGAGAGTATGTAAACTTAATTTTCACCAACCTTATTGCTCTCTAGTGCTTACTGCAGTGGTTCTCAACCTTCCTAATGCTGTGACCCTTTATTGCAGTCCCTCATATTTTGGTGACCCTTCCAACCATTAAATTACACTTGTTACTACTCTATAACTGTCATTTTGCTACAGCTATGAATCATAATATAAATATATGGTATGCAAGATATCTGATATTCCACCTCTGGTGGAAGTGTTTTCCTCCTCCCTGAAGGTCATGACTCACAGGTTTGAGAACTGCTGGCTTACTGTCATCTGTTTTCTCAAATCTGCCCACTTCCAGGTGGCCCATCCACCCATCCCCTTTCTCTGTGACCCCTCCAACCTCCTCCTTCCTCTTTCTCTAGCTCTGTTTGTCCTCAATGCGCCTACAGAACTCTCCGTCTGATCCTCATTCTTCACCCTTCGTATCTAATATTCCTGAAATTTTGGGTGTTTTCAG
Seq C2 exon
GAAACCAATCGCATACACTGTTGCCATGTAGTTCATCATCTTCGGTCCAAACAACAAGTTCTACCATTGCAAAGGACAGTGACGTTCCCTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010253:ENSRNOT00000068407:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCTCAAGACACTCGGAG
R:
GGAACGTCACTGTCCTTTGCA
Band lengths:
352-994
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]