GgaINT0003876 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:21792943-21793720:+
Coord C1 exon
chrUn_random:21792943-21793257
Coord A exon
chrUn_random:21793258-21793636
Coord C2 exon
chrUn_random:21793637-21793720
Length
379 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GCGCGGGGTGGTGTGTGCAGGCC
3' ss Score
3.93
Exon sequences
Seq C1 exon
AATTCACAGGGTTCAGGCTGGTGAATGGCAGCACGCCGTGCATGGGCAGGGTGGAAGTGGAGGTGCAGGGAACATGGGGCACCCTTTGTGCCTCCCGCTGGGACCTCTTGGACGCCCACGTTCTCTGCCATCACCTCGGCTGCGGGTTTGCGGTGTCCGTTCCTGAAGGAGGGCATTTTGGGAGAGGAACCGGCCCGGTCTGGAGTGACTCGTTCCATTGTGAGGGGACTGAGTCCAGCCTGGATCAGTGCCCAGTGACCGCCCTGGGGGCTTCTCCGTGCTCCCATGAGAACGATGCTGCCGTCATTTGCTCAG
Seq A exon
GTGTGTGTCAGGATAATGCTGCTGGAATTCCACCTTGTGTTCCACATGGCCACCCAAAAGTCGGGGATCCCCTGGCATCACCAGGCTGAACCTCTCCCCGGAGAAATCCTGCAGTGTGCATTTGTGGCATTTCTGCTCTCCCCAGGCCCGCCTCACAACGCACCTCTAAGACTGGTGGGTGGAGGGAGCCGGTGCGACGGGCGCGTGGAGATCTTCCAGCGCGGGACATGGGGCAGAGTCCTGGATGATCAGTGGGACATGGAGGACGCTAGCGTGGTGTGCCGGCAGCTGCGCTGCGGGGAGGCAGAGGCAGCCTACACTGTGCCGAGGGCCGAGCGAGGGACGGGCCCCATGGGGCTGCGCGGGGTGGTGTGTGCAG
Seq C2 exon
GCCACGAGGCCAGCCTGAGCCTCTGCAACACATCCCTGCCCGAGGCCACGGCGATCATGGAGGACGTGGGGGCCGTGTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022426:ENSGALT00000036004:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGTTCAGGCTGGTGAATG
R:
GATGTGTTGCAGAGGCTCAGG
Band lengths:
343-722
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]