RnoEX6005467 @ rn6
Exon Skipping
Gene
ENSRNOG00000036647 | Olr292
Description
olfactory receptor 292 [Source:RGD Symbol;Acc:1333185]
Coordinates
chr1:212715582-212804878:+
Coord C1 exon
chr1:212715582-212715890
Coord A exon
chr1:212756799-212756940
Coord C2 exon
chr1:212804564-212804878
Length
142 bp
Sequences
Splice sites
3' ss Seq
AGTGTGGCACCGCTCTACAGTGG
3' ss Score
2.64
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGGTACCACACGACAAATGGGGCTGGTTGATGGCAGCAGTCCTTGTGCTGGGATTGCACAGGCCACTGGGATTTCCAATTTCTCCCTGAGATGTGACTTGCATGAGAAGGAGGCTGGCGTTGTGTGCAGACAGCTGGAATGTGGCACTGCTCTGCAATGGTCCAGAGCCCACCATGGAACCAATGGGTATCATGAACGGAAGTACCTTACGTGCCAGGGAACAGAGTCTGACATTTTACATTGCCTGATTGATGTGAACTTCCTAGAGCAATGTGACCTTCTGACCTACACCCAGATTGTATGCACAG
Seq A exon
TGGTCCAAAACTCACCGTGGAAGTCGAGAACAGAAATTTGTGTCTTGCCAAGGAACAGAGGCTGAGATTTTCTTCTGCAAGATCAATGTGAACTTTATAGAGCAGTGTGATCTTCTATCCTACACCGAGGTGGTGTGCACAG
Seq C2 exon
GTCACGTGGAGGCCCGGCTGCTAGGTGGTACACACCCCTGTGAAGGACGCCTGGAGGTTCTTCGAGGACTTACCTGGGGCACAGTTTGCCATGATGACCTGGATATGCCCATGGCCCACGTGGTTTGTCGGGAGCTGGGGTGTGGCACTGCTGTATCCATACTCGGGAGTTCCCCCTTTGGCTATGGATCAGGGCCTGTGTGGACAGAGGCCTTTCACTGTGCGGGCAATGAATCACTGCTGTTCCATTGTCTGAGGGAGCCTGGACACCAGTGTGGCCATGATCAGGTTGCTGCACTAACCTGCTCAGGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036647-'2-10,'2-9,11-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.4)
A:
NO
C2:
PF0053013=SRCR=WD(100=90.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCAGACAGCTGGAATGTG
R:
AGTCCTCGAAGAACCTCCAGG
Band lengths:
256-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]