RnoEX6006202 @ rn6
Exon Skipping
Gene
ENSRNOG00000020935 | Capn1
Description
calpain 1 [Source:RGD Symbol;Acc:2267]
Coordinates
chr1:221354153-221363139:-
Coord C1 exon
chr1:221362979-221363139
Coord A exon
chr1:221355120-221355295
Coord C2 exon
chr1:221354153-221354164
Length
176 bp
Sequences
Splice sites
3' ss Seq
CCTCCTCTCCTGTCCTGCAGCTA
3' ss Score
11.56
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
GATGTCCTTCCGGGACTTCATACGTGAGTTCACCAAACTGGAAATCTGCAACCTTACACCTGACGCCCTTAAGAGCAGAACCCTCCGGAACTGGAATACCACATTTTACGAGGGCACCTGGCGCCGGGGAAGCACTGCTGGAGGCTGCAGGAACTACCCAG
Seq A exon
CTACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGCTGGAGGAGGTGGATGACGCAGACGACTATGACAGTCGAGAGTCCGGCTGCAGCTTCTTGTTGGCCCTCATGCAGAAGCATCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATTGGTTTTGCAGTGTACCAG
Seq C2 exon
GTCCCTCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020935-'16-17,'16-15,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.3=43.6)
A:
PF0106717=Calpain_III=FE(36.9=100)
C2:
PF0106717=Calpain_III=FE(1.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]