RnoEX6010158 @ rn6
Exon Skipping
Gene
ENSRNOG00000018798 | Bcan
Description
brevican [Source:RGD Symbol;Acc:2194]
Coordinates
chr2:187367702-187369001:-
Coord C1 exon
chr2:187368827-187369001
Coord A exon
chr2:187368459-187368586
Coord C2 exon
chr2:187367702-187367995
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTAGCCTCTTCTTCTGTTAGGTA
3' ss Score
8.23
5' ss Seq
ATGGTGATT
5' ss Score
3.18
Exon sequences
Seq C1 exon
GGGTCGTCTTCCTCTACCGAGAGGGCTCTGCCCGCTATGCTTTCTCCTTCGCTGGAGCCCAGGAAGCCTGTGCTCGCATCGGAGCCCGAATTGCCACCCCTGAGCAGCTGTATGCTGCCTACCTCGGCGGCTATGAACAGTGTGATGCTGGCTGGCTGTCCGACCAAACCGTGAG
Seq A exon
GTACCCCATCCAGAACCCACGAGAAGCCTGTTATGGAGACATGGATGGCTACCCTGGAGTGCGGAATTACGGAGTGGTGGGTCCTGATGATCTCTACGATGTCTACTGTTATGCCGAAGACCTAAATG
Seq C2 exon
GAGAACTGTTCCTAGGTGCCCCTCCCGGCAAGCTGACGTGGGAGGAGGCTCGGGACTACTGTCTGGAACGCGGTGCTCAGATCGCTAGCACGGGCCAGCTATACGCGGCATGGAATGGCGGCTTGGACAGATGTAGCCCTGGCTGGCTGGCTGATGGCAGTGTGCGGTACCCCATCATCACGCCCAGCCAACGCTGTGGGGGAGGCCTGCCAGGAGTCAAGACCCTCTTCCTCTTTCCCAACCAGACTGGCTTCCCCAGCAAGCAGAACCGCTTCAATGTCTACTGCTTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018798-'9-15,'9-14,11-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF073547=Sp38=PD(42.7=54.2),PF0019312=Xlink=PU(60.4=98.3)
A:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
C2:
PF0019312=Xlink=WD(100=98.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCGTCTTCCTCTACCGAG
R:
CGTTCCAGACAGTAGTCCCGA
Band lengths:
245-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]