RnoEX6013282 @ rn6
Exon Skipping
Gene
ENSRNOG00000026306 | Clec5a
Description
C-type lectin domain containing 5A [Source:RGD Symbol;Acc:1584755]
Coordinates
chr4:68813979-68819330:-
Coord C1 exon
chr4:68819232-68819330
Coord A exon
chr4:68814444-68814503
Coord C2 exon
chr4:68813979-68814115
Length
60 bp
Sequences
Splice sites
3' ss Seq
AGGATTTCTTTTCATTTCAGTCT
3' ss Score
6.1
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATCCCTGAACCCCCATCATCATGAACTGGCACATGACCATCTCAGCTCTTATCGTAGTAGTGATCAAAGTTGTTGGAATGACCTTTTTTCTGCTGTACT
Seq A exon
TCTCACAGATTTTTGGAAGAAGTGATGAAAGCTTCGTTCCCACAAGGAGCTCTGGAACAG
Seq C2 exon
CCTGTCCCAACAACTGGGATTTTCACCAAGGAAGATGTTTTTTCTTCTCTACCTCTGAATCACCTTGGAAAAACAGCAGGGACTATTGTGCAACAAAAGGATCCACACTGGCAATTGTCGACACTCCAAAGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026306-'1-3,'1-2,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(27.6=58.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCTGAACCCCCATCATCA
R:
TTCCTTGGTGAAAATCCCAGTTGT
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]