RnoEX6015257 @ rn6
Exon Skipping
Gene
ENSRNOG00000006709 | Pzp
Description
pregnancy-zone protein [Source:RGD Symbol;Acc:628643]
Coordinates
chr4:161812807-161816794:-
Coord C1 exon
chr4:161816743-161816794
Coord A exon
chr4:161813442-161813525
Coord C2 exon
chr4:161812807-161812983
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTAATGTCTTCTTTCATTAGATG
3' ss Score
7.53
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CCTGAAGGAATTGAGAAGGAACAAACGTACAACACACTGTTATGCCCACAAG
Seq A exon
ATGCTGAGTTACAGGAAAATTGGACACTGGATCTTCCAGCCAATGTGGTTGAAGGATCTGCCAGGGCTACACAGTCCGTTTTGG
Seq C2 exon
GCGATATACTAGGCTCTGCGATGCAAAACCTCCAGAATCTTCTCCAGATGCCCTATGGCTGTGGGGAACAAAACATGGTCCTCTTCGTCCCTAACATCTACGTTCTGGAGTATCTCAATGAGACACAGCAGCTGACAGAGGCGATCAAGTCCAAGGCCATTAGCTACCTCATCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006709-'25-32,'25-31,26-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACACACTGTTATGCCCACA
R:
GACTTGATCGCCTCTGTCAGC
Band lengths:
175-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]