RnoEX6015260 @ rn6
Exon Skipping
Gene
ENSRNOG00000006709 | Pzp
Description
pregnancy-zone protein [Source:RGD Symbol;Acc:628643]
Coordinates
chr4:161808995-161811064:-
Coord C1 exon
chr4:161810887-161811064
Coord A exon
chr4:161809946-161810196
Coord C2 exon
chr4:161808995-161809213
Length
251 bp
Sequences
Splice sites
3' ss Seq
CCATCCTTTCTGTTTGAAAGAGG
3' ss Score
3.3
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
CACAGTGTTGTTCGTAATGCTCTATTCTGCCTGGAAACGGCCTGGGCCTCCATCTCAAACAGCCAAGAAAGTCATGTCTACACAAAAGCACTGCTGGCCTATGCCTTTGCCCTGGCAGGAAACAGAGCCAAGCGAAGCGAGGTGCTTGAATCCCTAAACAAAGACGCTGTGAATGAGG
Seq A exon
AGGAATCAGTGCACTGGCAACGTCCTAAGAATGTCGAGGAAAATGTCCGGGAAATGAGGTCCTTCTCTTATAAACCGCGGGCCCCTTCTGCTGAAGTGGAGATGACAGCTTACGTGCTTCTCGCCTACCTCACCTCTGCATCTTCCCGGCCTACGCGAGACCTTTCTTCATCGGACCTGACTACAGCATCCAAGATTGTGAAGTGGATCAGCAAACAACAAAACTCCCATGGGGGGTTCTCCTCCACTCAG
Seq C2 exon
GATACAGTGGTGGCTCTTCAAGCCCTCTCCAAATATGGAGCAGCCACTTTTACGAAAAGTAATAAAGAAGTGTCGGTCACCATCGAGTCTTCAGGGACCGTCTCTGGGACTCTCCATGTTAACAATGGCAATCGCCTGCTGCTGCAGGAAGTCAGGCTGGCAGATCTGCCCGGAAATTACATCACCAAAGTGTCAGGGTCAGGATGTGTGTACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006709-'32-42,'32-39,33-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.226 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(22.2=100)
A:
PF076789=A2M_comp=FE(31.2=100)
C2:
PF076789=A2M_comp=PD(4.9=17.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCATCTCAAACAGCCAA
R:
CAGATCTGCCAGCCTGACTTC
Band lengths:
301-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]