BtaEX6024073 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101259291-101262374:+
Coord C1 exon
chr5:101259291-101259468
Coord A exon
chr5:101260530-101260753
Coord C2 exon
chr5:101262156-101262374
Length
224 bp
Sequences
Splice sites
3' ss Seq
TATCCTTTTTTATTTCTAAGAGG
3' ss Score
6.52
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
CACTCAATTGTCCGCAATGCTCTCTTCTGCCTGGAAAGGGCCTGGCAATCTGCCTCAGAGGCCCAAGGAAGTTTTGTCTATACCAAGGCGTTATTGGCCTATGCCTTCGCACTAGCAGGAGACCAAGCCAAACGAAACGAACTGCTTGAGTCACTACACAAAGAGGCTGTAAAAGAAG
Seq A exon
AGGACTCAATCCACTGGCAACGTCCTAGAAAGCCTCAAGAAGTTAATGAACTCTACAGTCCACACCGGGCTCCTTCTGTTGATGTGGAGATGACATCTTACTGCCTCCTTGCCCATCTTACTGCCCAGCCTGCCCCATCTTCAGAAGATCTGTCTGTGGCTACACAGATTGTAAAATGGCTCACCAAGCAACAGAACCCCAATGGCGGCTTCTCCTCCACTCAG
Seq C2 exon
GATACAGTGGTGGCTCTTCAGGCACTCTCCAAATATGGAGCAGCAACTTTTATTAAAGGGGAGAAAGCAGCTACTGTCACCGTCAAGTCTGCAGGGACCTTCTCTGAAGAATTCCAAGTAGATGAAGCCAAACGTCTACTGCTGCAGGAGGTGGCTTTGCCAGAGATCCCGGGGAAGTACAGCACAGCCGTGACAGGGTCGGGATGTGTGTACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461-'45-55,'45-53,46-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.307 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(23.0=100)
A:
PF076789=A2M_comp=FE(28.9=100)
C2:
PF076789=A2M_comp=PD(5.1=17.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCTTCTGCCTGGAAAGG
R:
GCAGCAGTAGACGTTTGGCTT
Band lengths:
305-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]