GgaEX1041612 @ galGal4
Exon Skipping
Gene
ENSGALG00000022962 | OVST
Description
ovostatin precursor [Source:RefSeq peptide;Acc:NP_990557]
Coordinates
chr1:75780454-75781934:-
Coord C1 exon
chr1:75781769-75781934
Coord A exon
chr1:75781283-75781500
Coord C2 exon
chr1:75780454-75780669
Length
218 bp
Sequences
Splice sites
3' ss Seq
CACCCTCTTCGTTTATTCAGACG
3' ss Score
7.77
5' ss Seq
CAGGTGCAT
5' ss Score
4.89
Exon sequences
Seq C1 exon
CACACAGTAATCCGAAATGCCTTTTATTGCCTGGAGACTGCATCTGAAAAAAATATCACTGACATTTACACGCAGGCACTTGTGGCCTATGCCTTCTGTTTAGCTGGCAAGGCAGAAATATGTGAATCATTCCTTAGAGAACTACAGAAATCAGCAAAGGAAGTTG
Seq A exon
ACGGTTCAAAGTACTGGGAGCAGAACCAGAGATCTGCACCTGAAAAATCCCACCTCTTAGACCATGTTCAACCAACTGATGTTGAGATCACCAGCTACGTGCTGTTGGCATTGCTCTACAAACCAAATCGCAGTCAAGAGGATCTCACAAAGGCCTCAGCAATTGTGCAGTGGATTATCAGGCAACAGAATTCCTATGGAGGTTTCGCTTCCATGCAG
Seq C2 exon
GACACGGTGGTTGCTCTTCAAGCCCTTGCTGCTTATGGTGCGGCCACCTACAATTCAGTTACACAAAATGTCATCAAGATCAATTCCAAGAACACTTTTGAGAAAGTATTTACTGTTAATAATGAGAACAGGCTCCTACTGCAACAGACTCCCCTTCCTCAAGTCCCTGGGAAATACAGCTTAACAGTGAATGGCACTGGATGTGTACTTATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.114 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(22.2=100)
A:
PF076789=A2M_comp=FE(29.0=100)
C2:
PF076789=A2M_comp=PD(5.2=18.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGGAGACTGCATCTGAA
R:
GGGGAGTCTGTTGCAGTAGGA
Band lengths:
293-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]