RnoEX6015283 @ rn6
Exon Skipping
Gene
ENSRNOG00000057410 | Klrb1
Description
killer cell lectin-like receptor subfamily B, member 1 [Source:RGD Symbol;Acc:1587563]
Coordinates
chr4:162789151-162790393:+
Coord C1 exon
chr4:162789151-162789225
Coord A exon
chr4:162789739-162789893
Coord C2 exon
chr4:162790278-162790393
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTCTTCTCTAGTGA
3' ss Score
10.6
5' ss Seq
TTGGTAAAC
5' ss Score
3.22
Exon sequences
Seq C1 exon
TGGGATTCTTGGTGCAAAAACCACCAATAGAAAAATGCAGTGTGGCTGTTCAAGAGAACAAGACTGAACCAACAG
Seq A exon
TGAGATCAACCATTCTAGAGTGCCCAAGAGATTGGCATTTGCACTGGAATAAATGCTTATTTATTTCTCAAACTTCCAGACCTTGGGCTGAAGGTCTCGCTGACTGTTCTTTGAGAGGAGCCACTTTGCTGCTCATTGGAGATGGAAAAGAATTG
Seq C2 exon
AAATTATTGCAGGACTTCTCAAAGGGAAAAGGACAACAATTTTTTATTGGACTAAAATATGTACAAGAGGACAAGGTTTGGAAGTGGATGAATGGTTCTATTTTAAATACTAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057410-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149271=Neurensin=FE(19.8=100)
A:
PF149271=Neurensin=PD(38.1=92.3),PF0005916=Lectin_C=PU(26.5=51.9)
C2:
PF0005916=Lectin_C=FE(37.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATTCTTGGTGCAAAAACC
R:
AAATAGAACCATTCATCCACTTCCA
Band lengths:
178-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]