BtaEX6024037 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012029 | KLRB1
Description
killer cell lectin-like receptor subfamily B, member 1 [Source:HGNC Symbol;Acc:HGNC:6373]
Coordinates
chr5:100955185-100957721:+
Coord C1 exon
chr5:100955185-100955259
Coord A exon
chr5:100957062-100957216
Coord C2 exon
chr5:100957606-100957721
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTTATCTTACTTTAGAGA
3' ss Score
8.39
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
TGATATTCATAAGACAAAACACATCAGTAGAAAAAACCAGCATGGATGCTCAAGAGAACAGGAAGGAAGCAACAG
Seq A exon
AGAGACCAGTTCTGTTAACGTGTCCAATGCACTGGAAACGAATCCGAGATAAATGCTTATATTTTAGTGAAACTTCCAAACCTTGGAATGATAGTCTAGCTGACTGTTCCACAAGAGAATCCAGTCTACTGCTTATTCAAGATCAGGAAGAATTG
Seq C2 exon
AGACTCATGCAAAACCTGATAAACAAAGAAGGAATTCTGTTTTGGATTGGATTAAATTTTACATTATCAGGGAAGAGCTGGAAGTGGATAAATGGTTCCTTTTTAAATTCTAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012029-'3-5,'3-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(26.5=51.9)
C2:
PF0005916=Lectin_C=FE(37.3=100)
Main Skipping Isoform:
ENSBTAT00000015955fB3725
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGATGCTCAAGAGAACAGGA
R:
AAAAGGAACCATTTATCCACTTCCA
Band lengths:
138-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]