HsaEX6065121 @ hg38
Exon Skipping
Gene
ENSG00000111796 | KLRB1
Description
killer cell lectin like receptor B1 [Source:HGNC Symbol;Acc:HGNC:6373]
Coordinates
chr12:9598046-9599841:-
Coord C1 exon
chr12:9599767-9599841
Coord A exon
chr12:9598499-9598653
Coord C2 exon
chr12:9598046-9598161
Length
155 bp
Sequences
Splice sites
3' ss Seq
ATTTCTGTTTTTTACTTTAGAGA
3' ss Score
9.13
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
TGACATCCTTAATACAGAAATCATCAATAGAAAAATGCAGTGTGGACATTCAACAGAGCAGGAATAAAACAACAG
Seq A exon
AGAGACCGGGTCTCTTAAACTGCCCAATATATTGGCAGCAACTCCGAGAGAAATGCTTGTTATTTTCTCACACTGTCAACCCTTGGAATAACAGTCTAGCTGATTGTTCCACCAAAGAATCCAGCCTGCTGCTTATTCGAGATAAGGATGAATTG
Seq C2 exon
ATACACACACAGAACCTGATACGTGACAAAGCAATTCTGTTTTGGATTGGATTAAATTTTTCATTATCAGAAAAGAACTGGAAGTGGATAAACGGCTCTTTTTTAAATTCTAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111796-'3-6,'3-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(26.5=51.9)
C2:
PF0005916=Lectin_C=FE(37.3=100)
Main Skipping Isoform:
ENST00000229402fB18465
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAATAGAAAAATGCAGTGTGGA
R:
AGAGCCGTTTATCCACTTCCAG
Band lengths:
154-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains