MmuEX6007337 @ mm10
Exon Skipping
Gene
ENSMUSG00000030154 | Klrb1f
Description
killer cell lectin-like receptor subfamily B member 1F [Source:MGI Symbol;Acc:MGI:2442965]
Coordinates
chr6:129053183-129054371:+
Coord C1 exon
chr6:129053183-129053257
Coord A exon
chr6:129053712-129053866
Coord C2 exon
chr6:129054256-129054371
Length
155 bp
Sequences
Splice sites
3' ss Seq
ATGTCCTCTCTCTTCTCTAGGAA
3' ss Score
12.99
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
TGAGATTCCTAGTGCAAAAACCACCAATAGAAAAATGCAGTGTGGCTGCTCAAGAGAACAGGACTGAACTAACAG
Seq A exon
GAAGATCAGCCATACTAGAGTGCCCGAGATATTGGCATCCACACTGGAACAAATGTTTATTTGTTTCTCAAATTTCCAGACCTTGGGCAGAAGGTCGAGATGCCTGCTCTATGGAAGACGCCATTTTGTTGCTCATTGAAAATAAAGAAGAACTG
Seq C2 exon
AGATTTGTGCAGAACTTGATAAAGGGAAAAGAACAGTTATTTTTTATTGGACTAAAATATGTACAGAAGGAGAAGATCTGGAAGTGGATAGATGGCTCTATTTTAAATCCTAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030154-'8-7,'8-4,10-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(26.5=51.9)
C2:
PF0005916=Lectin_C=FE(37.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTAGTGCAAAAACCACCA
R:
AGGTTAGGATTTAAAATAGAGCCATC
Band lengths:
186-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types