RnoEX6015799 @ rn6
Exon Skipping
Gene
ENSRNOG00000010002 | Stpg3
Description
sperm-tail PG-rich repeat containing 3 [Source:RGD Symbol;Acc:1561978]
Coordinates
chr3:2433481-2434051:-
Coord C1 exon
chr3:2433894-2434051
Coord A exon
chr3:2433659-2433793
Coord C2 exon
chr3:2433481-2433569
Length
135 bp
Sequences
Splice sites
3' ss Seq
AGTTTGCTTTTTTGTATCAGGGC
3' ss Score
7.04
5' ss Seq
GAGGTGCAT
5' ss Score
2.99
Exon sequences
Seq C1 exon
GTCCAATGCTACTGTGCTATGGTGGGACCAGGAGCTGGAGGCTGCCTGGGATGAGATGTGGCTCCCAAAGATGAAGAGAGCTTCAAGCGGCTTCAAATTAAAATCAGGCACTCCTAATGAGTCCACACCTATTGGCACAGGGACTCTGAGGGAGCTGT
Seq A exon
GGCTAGAGAGACGTCCTCCAATCCTGACAGACCTGGATGTCCCTGGCCCAACCCAGTATGAGGCGCCCAATGTGTCTCTGCGAGAATCTTCTCCACACCCCCAATACACCATCGGGCGCAAGTACCCGGGTCGAG
Seq C2 exon
AGGGTGGTGGCCGCAGGGCATGGCAGACCATGTGGCTCCAGAGTGAAAGCCCCTTCACACAGAAGACTGACTTCAACCGAGAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010002-'2-4,'2-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.352 A=0.717 C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAATGCTACTGTGCTATGGT
R:
TGTCTCTCGGTTGAAGTCAGTCT
Band lengths:
244-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]