RnoEX6016051 @ rn6
Exon Skipping
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5547387-5551447:+
Coord C1 exon
chr3:5547387-5547579
Coord A exon
chr3:5548426-5548546
Coord C2 exon
chr3:5551318-5551447
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTACTCATTGCTCTCTTTAGGTG
3' ss Score
10.06
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATGGGAGGTGTCAGACCCTAGCCCTTGCGTGTCATCTGCGTGTGAACCCGGTCTGGAGTCAGGGAGTGGGACATGTGTGCCCAGGGTGGGTGACTCAGAGAAGCCAGCGATGGCAGGCCCCTGCCGCCCGGATGACATGTCACCTGTGCCGGAGCCCTGCGTTAGGACCACATGTTCTCCAGGCTCGGGTCCG
Seq A exon
GTGGACACCATGTCTCTGGGAGAGGAGGCTTCATCCCCAGTGGGCAGTGGCAAGCCAAGCTCTCAGGCTGAACATGTGTGGACTCCTCTGGTGGGGCTGTGCTCCATTTCTTGTGGGAAAG
Seq C2 exon
GTCTGAAGGAGCTGTATTTCCTGTGCATGGATTCTGTCCTCAAGATGCCTGTCCAGGAAGAGCTATGTGGCTTGGCCAGTAAGCCCCCAAGCCGGTGGGAGGTCTGCAGGGCTCGCCCATGTCCTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780-'24-25,'24-24,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=0.561 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGCCCTTGCGTGTCATCTG
R:
GCCAAGCCACATAGCTCTTCC
Band lengths:
252-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]