BtaEX0002430 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104396769-104399196:+
Coord C1 exon
chr11:104396769-104396924
Coord A exon
chr11:104397526-104397646
Coord C2 exon
chr11:104399067-104399196
Length
121 bp
Sequences
Splice sites
3' ss Seq
TCGGTGCCTGGCCCCTGCAGCTG
3' ss Score
7.86
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCCTGTGGCGCAGACCCGGCCGTGCAGAACACGACGTGTGTGCCGGGGTCAGATGGCACGGGGCTGTTGGTGACTGCTGGGCCCTGCTCTGCAGACGAGAAGCCGCCTGCCCCGGAGCCCTGTGTCGAGGCGACATGTCCTCCCGGCTGGGACCAG
Seq A exon
CTGGACGTCCGGCCCCCGGGGCGGGAGGCTGCGTCCCCAGCGGGCGGCCCCGGGCTGGAGGCACTTGCCGCGCACGTGTGGACACCCCTGGCGGGGCCCTGCTCTGTCTCCTGTGGTCAAG
Seq C2 exon
GCCTGGTGGAACTGCGTTTTGTGTGCATGGACACTGCCCTCAGGACACCCGTCCGGGAAGAGCTGTGTGACCTGGCAAGCAAGCCCGGGAGCCGGCGGGAGGCCTGCCAGGCTGCCCCGTGCCCGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.512 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGCCGGGGTCAGAT
R:
CTTGCTTGCCAGGTCACACAG
Band lengths:
203-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development