BtaINT0013992 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104396769-104397646:+
Coord C1 exon
chr11:104396769-104396924
Coord A exon
chr11:104396925-104397525
Coord C2 exon
chr11:104397526-104397646
Length
601 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCGGTGCCTGGCCCCTGCAGCTG
3' ss Score
7.86
Exon sequences
Seq C1 exon
GCCTGTGGCGCAGACCCGGCCGTGCAGAACACGACGTGTGTGCCGGGGTCAGATGGCACGGGGCTGTTGGTGACTGCTGGGCCCTGCTCTGCAGACGAGAAGCCGCCTGCCCCGGAGCCCTGTGTCGAGGCGACATGTCCTCCCGGCTGGGACCAG
Seq A exon
GTGAGCATCCTGGGAGAAGGGGGAGCTCTGGTTACACTGGCCTCCTGGCCAGAGCTGGAAGACCTCCCTCGTGCAGGGCTGCTGTCCCCGGGAGGCCCCTGGGCAGAGGGCAGACTTCGATGCAGAGCTCAGGGTGCTGGGACGCCCCCTCCCCACTGGCGAGCAGCCTGAAGCGTCCAGAGCCTGATAAGATGGTGGCACTTTGCTGCCAGGCTCCCACCGGCGTCCATGGGCTCAAGCTGGGAGGCGTTGCTTTCAGACAAGCATGCCAGCCCATGCCCCCGACTTCCCTGGGCTGTGGCAGTGGGGAGGGGACTTCAGGGCCAGGCGTGCCTGCTGATCTGGCTCCCAAGGCCCAGCACCGCCTGCCCCACGGTGACTGCTCAGGCTGGTGTAGAGGCCAGTGTGGGGCATGAAGTCACTGCCGGAGCCAGGAAGCCAGCTTCCCGGGAAAGCAGCCGTGGGTGGGTGGCCTTTGGGTACTGGTGACCACTTCCTTTCTCTCCTGAAGGGGTGTGCTGGGTGGGAGTGGAGGGCCAGGTGCCCGGGGGTCTGGAGGTGGGAGGCCCAGACCCACCAGCTCGGTGCCTGGCCCCTGCAG
Seq C2 exon
CTGGACGTCCGGCCCCCGGGGCGGGAGGCTGCGTCCCCAGCGGGCGGCCCCGGGCTGGAGGCACTTGCCGCGCACGTGTGGACACCCCTGGCGGGGCCCTGCTCTGTCTCCTGTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093:ENSBTAT00000020085:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.512
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGCCGGGGTCAGAT
R:
TTGACCACAGGAGACAGAGCA
Band lengths:
240-841
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development