RnoINT0013306 @ rn6
Intron Retention
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5547387-5548546:+
Coord C1 exon
chr3:5547387-5547579
Coord A exon
chr3:5547580-5548425
Coord C2 exon
chr3:5548426-5548546
Length
846 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TTACTCATTGCTCTCTTTAGGTG
3' ss Score
10.06
Exon sequences
Seq C1 exon
ATGGGAGGTGTCAGACCCTAGCCCTTGCGTGTCATCTGCGTGTGAACCCGGTCTGGAGTCAGGGAGTGGGACATGTGTGCCCAGGGTGGGTGACTCAGAGAAGCCAGCGATGGCAGGCCCCTGCCGCCCGGATGACATGTCACCTGTGCCGGAGCCCTGCGTTAGGACCACATGTTCTCCAGGCTCGGGTCCG
Seq A exon
GTGAGTAGTTGGGGATGGAGGGTGGCCATGAGTCCCGAGTCATTTATTAGCCATGAGAATGAAAAACACACAGGTTGTCATCCTCCTGCAGGCCAGAGTGAGGACTCCATCCTCCTCAGGATGCTGCCTAAGAACACCCTGTCAGAGAAGCACTTAAAGTGCTTCTGAAAGGGGTGAGCCAGGCTGAGAGAAAACAGAGCCTATCAGAGCCGCTGAGTTATTGAAGTGCTGAGAACCAAATCTAAGGCCTTCAGTACGCTAGGCGAACACTCTCCCGCTGAGCTGTAGCCCTGGCCTTTTCCTTTTTATATTTTAAATTCTGAGACAGTGTCTCACTAAATTGCTTGGGACCTGTCTGTAGCCCATAGCCCTTGAACTTTCAGTGCTCCTGCCTAGGCCTCCCAAGTTGTAGGGGCCACAGGCTTGTGACACCAGGCACAGCAAGGAAAGAGTTCTCCAGCTACCGTGAAGTAATTCTTCCAACTTTCGCCTGGCATCCAGGGGCTTCAGGTTGATGTTGCTGACAGGCTGAAGGACCCTGAAGTCTTCTGGCCTAGGGACTTCAGGGCCAAGCATGCATGCCAATCCATTCCTGCTCCTTAGCTCCCAGCCCCGTCCCGCAGGCACCACTTGGGATGACAAGGCAGCTTCATAGGCCAAAGTGAGGTGCATGGTGAGGGCTTCACCAAGGGGCAGCACACTGACCTCCCTAGAGAACAGCAGGGAGGAAACCCTGGTGTGTTTGGAATATTCCTCTTTCCTCATGAAAGGGAGAGGAGGAGGGAGGCTGGCAGCTGCAAGGCAGAAGCCAGAATGTCAGACTCACTTACTCATTGCTCTCTTTAG
Seq C2 exon
GTGGACACCATGTCTCTGGGAGAGGAGGCTTCATCCCCAGTGGGCAGTGGCAAGCCAAGCTCTCAGGCTGAACATGTGTGGACTCCTCTGGTGGGGCTGTGCTCCATTTCTTGTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780:ENSRNOT00000007640:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=NA C2=0.561
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTCAGACCCTAGCCCTT
R:
CACAAGAAATGGAGCACAGCC
Band lengths:
302-1148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]