RnoEX6016422 @ rn6
Exon Skipping
Gene
ENSRNOG00000010477 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:RGD Symbol;Acc:620078]
Coordinates
chr3:11260591-11261427:+
Coord C1 exon
chr3:11260591-11260656
Coord A exon
chr3:11260743-11260836
Coord C2 exon
chr3:11261272-11261427
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATTTCAGTTGTCTTTTTCAGGAT
3' ss Score
10.21
5' ss Seq
AATGTAGGT
5' ss Score
5.12
Exon sequences
Seq C1 exon
CCCTTTCTCAGTGCACTGGTGGCTGTGGCTAATGCTGACCGGAGTCTCTTGTTCCTGTGCGGTTGG
Seq A exon
GATCAAGTACATGGGCATTTTCACCTACTTGCTCGTGCTCAGCATTGCAGCTGTGCATGCCTGGCACCTGATCGGAGACCAGACCTTGTCAAAT
Seq C2 exon
ATCTGCGTGCTCAGTCACTTGCTCGCCAGAGCCGTAGCTCTGCTGGTCGTCCCGGTCTTCCTGTACTTACTGTTCTTCTATGTCCACCTGATGTTGCTCTACCGCTCTGGGCCCCATGACCAAATCATGTCCAGTGCCTTCCAAGCCAGCTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010477-'12-15,'12-13,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(12.0=100)
A:
PF0236613=PMT=FE(12.5=100)
C2:
PF0236613=PMT=PD(13.3=63.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTCTCAGTGCACTGGTGG
R:
GAGCGGTAGAGCAACATCAGG
Band lengths:
172-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]