DreEX6013224 @ danRer10
Exon Skipping
Gene
ENSDARG00000067670 | pomt1
Description
protein-O-mannosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-060929-966]
Coordinates
chr5:50467627-50471339:+
Coord C1 exon
chr5:50467627-50467686
Coord A exon
chr5:50469865-50469958
Coord C2 exon
chr5:50471184-50471339
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTCTTTTTTTCAGAGT
3' ss Score
11.45
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
CTCATTTTTCAAGTGGTTTTGGCTTGTGATCTGTGGGGTCAGCTGTGCATTCGGAATTGG
Seq A exon
AGTAAAGTACATGGGTATGTTCACATACTTTCTACTGCTGAGCCTGGCAGCTGTACACACCTGGCAGCTTATTGGAGATCAAACCTTGAGCCAT
Seq C2 exon
GGCAAAGTAATGTTCCAGGTATTGGTTCGCTTCCTGGCACTCGTGGTGCTACCTGTCATCATGTACCTTGGGTTTTTCTACATTCATCTGACCTTGCTATATCGCAGTGGACCTCATGACCAGATGATGAGCAGTGCCTTTCAAGCAAGTCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067670-'7-9,'7-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(8.2=100)
A:
PF0236613=PMT=FE(12.7=100)
C2:
PF0236613=PMT=PD(13.5=63.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTGATCTGTGGGGTCAGC
R:
GGCACTGCTCATCATCTGGTC
Band lengths:
176-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]