RnoEX6016550 @ rn6
Exon Skipping
Gene
ENSRNOG00000048914 | Traf1
Description
TNF receptor-associated factor 1 [Source:RGD Symbol;Acc:1596290]
Coordinates
chr3:14019569-14022672:-
Coord C1 exon
chr3:14022637-14022672
Coord A exon
chr3:14020622-14020660
Coord C2 exon
chr3:14019569-14019686
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTTTATCCCCCATTGTACAGATG
3' ss Score
7.8
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
CGCTCCTGCCCCGTACGAGCAGGAGGCAGCGCTCAG
Seq A exon
ATGCAGAAAGTGAAGCTCAGACACATTGAAGATTGTGTG
Seq C2 exon
ACATAGGGTAGGCAAGTGACAGTACAAGAAAGTGACATATTGCCTGAGGTCACCCGGAGGACCCAGAGCTGGATCCTGGGGCTTCTCATCAGAGAGGGTGAGCCCCGTTGTCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048914-'2-2,'2-1,7-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGTACGAGCAGGAGG
R:
CTCTGATGAGAAGCCCCAGGA
Band lengths:
122-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]