RnoEX6016850 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37701554-37702720:-
Coord C1 exon
chr3:37702616-37702720
Coord A exon
chr3:37702381-37702485
Coord C2 exon
chr3:37701554-37701658
Length
105 bp
Sequences
Splice sites
3' ss Seq
GAGTCGGCTTTCTACAACAGGTG
3' ss Score
5.8
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CTTCGCTACAAAGAAACATTTCAAAAGACGAAAGGGAAATATCACACTGTGAAGGACGCCCTGGACATCGTGTATCATCGCAAAGTCACCGACGACATCAGTAAA
Seq A exon
GTGAAATACAAGGAAAACTACATGAGCCAGCTGGGAATCTGGAGTTCCATTCCTGATCGCCCTGAACATTTCCACCACCGGGCAGTCACTGATGCCGTCAGCGAT
Seq C2 exon
GTGAAATATAAAGAAGATTTGACCTGGCTTAAAGGCATTGGCTGCTATGCCTATGATACCCCTGACTTGGCATTAGCTGAACAGAACAAGACTCTCTACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'122-131,'122-130,123-131=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4)
A:
PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGCTACAAAGAAACATTTCAAA
R:
CTTGCTGTAGAGAGTCTTGTTCTGT
Band lengths:
210-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]