RnoEX6017218 @ rn6
Exon Skipping
Gene
ENSRNOG00000024700 | AABR07052443.1
Description
NA
Coordinates
chr3:54735801-54740814:+
Coord C1 exon
chr3:54735801-54735974
Coord A exon
chr3:54739296-54739402
Coord C2 exon
chr3:54740677-54740814
Length
107 bp
Sequences
Splice sites
3' ss Seq
GACTGATTTTCTTTGGATAGAAC
3' ss Score
4.62
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GCCTCCCAGTGCAGACAAACGGAATGCCTCAATATTCTCTTGAAGCATGGCGCTGACCCAAACATTATGGACTGCAGTGACAATACTGCCCTGCACTACGCTGTCTACAACGGGGACATCGAAACAGCCACTAAGCTGCTTGAATACAAGGCCAACATCGAAGCGATAAACGAG
Seq A exon
AACAAGATCACACCGCTTTTGCTTGCTCTGAAACAAAACAAGGAGAAGATGGCAGAATTCTTAATCCACAACGGAGCAAACGCAAAGACATGTGACTTCCTGGGAAG
Seq C2 exon
AAGCAGCCTTATGTATGCTGTAAGATGTGGGTCAGAACTTATCATCAAGCTGTTGCTTCAAAGAGATATCGACACCTTTAAGCAAGATGTTTTTGGATGGACAGCTAAGCGTTATGCTGTTGAGAGTAAAAGCAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024700-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
86%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(72.7=41.4),PF127962=Ank_2=PU(29.0=46.6)
A:
PF127962=Ank_2=FE(37.6=100)
C2:
PF127962=Ank_2=PD(31.2=61.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCGCTGACCCAAACATT
R:
AACGCTTAGCTGTCCATCCAA
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]