RnoEX6017323 @ rn6
Exon Skipping
Gene
ENSRNOG00000007981 | Klhl23
Description
kelch-like family member 23 [Source:RGD Symbol;Acc:1307166]
Coordinates
chr3:56057043-56063612:+
Coord C1 exon
chr3:56057043-56057157
Coord A exon
chr3:56058876-56060090
Coord C2 exon
chr3:56063460-56063612
Length
1215 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTATATTTATTACAGCCA
3' ss Score
6.82
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AAGTGGGGCTAGAAACCCAAGTTGGCTTCCTGGTTGTTCTGGTGCAGTTTCAGCAGAGGTTGTGGCTTGGCTCTCTGCGCTTCTTAGGTGTTTCAGAGCTCTCCTACCATGTAAG
Seq A exon
CCATGGCTCTAAAAGGACAAGAAGATTACATTTATCTTTTCAAGGATTCGTCGCATCCAGTGGATTTTCTGGATGCATTCAGAACATTTTACATGGATGGATTATTTACCGATATTACCCTTCAGTGTCCTTCAGGCATCATCTTCCATTGTCACCGAGCTGTTTTAGCTGCCTGCAGCAATTATTTTAAGGCAATGTTCACAGCTGACATGAAAGAAAAATTTAAAAGTAAAATAAAACTGTCCGGCATCCACCACGATATTTTGGAAGGCCTTGTAAATTATGCATACACTTCTCAAATTGAAATAACTAAAAGAAATGTGCAAAGCCTTCTTGAAGCAGCCGATCTGCTTCAGTTCCTTTCGGTAAAGAAGGCTTGCGAGCAGTTTCTGGTCAGGCACCTGGATATTGATAACTGTATCGGGATGCACTCTTTTGCAGAATTTCATGTGTGCTCTGAACTAGAAAAGGAGTCCCGAAGGATTCTCTGCTCCAGGTTCAAGGAAGTGTGGCAACAAGAAGAATTTCTGGAAATCAGCCTTGAAAAGTTCCTCTTTATCTTATCCAGAAAGAATCTCAGTGTCTGGAAGGAAGAAGCTATCCTAGAGCCGGTCATTAAGTGGACTGCTCATGACGTAGAGAACCGAGTTGAATGTCTCTACAACCTGCTAAGCTATGTCAACATAGACATAGACCCAGTGTATTTAAAGACAGCTTTAGGTCTTCAAAGAAGCTGTCTACTGACTGAAAATAAGATACGTTCCCTAATATACAACGCCCTGAATCCCATGCATAAAGAGATTTCCCAGCGGTCCACAGCCACCATGTATATCATTGGAGGCTACTACTGGCACCCTTTGTCAGAGGTCCACATATGGGATCCTTTGACAAATGTTTGGATTCAGGGAGCAGAAATACCAGATTATACCAGGGAGAGTTACGGTGTTACATGCCTAGGACCCAACATTTATGTAACCGGAGGGTATAGAACAGATAACATAGATGCCCTAGACACAGTGTGGATCTATAACAGCGAAGGGGACGAGTGGACGGAAGGCCTGCCCATGCTCAACGCCAGGTATTACCACTGTGCAGTCACCTTGGGCGGCTGTGTCTACGCACTAGGCGGGTACAGAAAAGGCGCTCCCGCGGAAGAGGCTGAGTTCTACGATCCTCTGAAAGAGAAGTGGCTTCCCATCGCAAACATGATTAAAG
Seq C2 exon
GTGTGGGAAATGCGACCGCCTGTGTCCTGCATGAAGTCATCTATGTCATTGGCGGCCACTGTGGCTACAGAGGAAGCTGCACGTATGACAAGGTGCAGAGTTACAATTCAGACATCAACGAATGGAGCCTTATTACTGCGAGTCCACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007981-'0-4,'0-0,5-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0065126=BTB=WD(100=26.9),PF0770710=BACK=WD(100=25.2),PF0134420=Kelch_1=WD(100=8.1),PF0134420=Kelch_1=WD(100=11.6),PF0134420=Kelch_1=WD(100=11.4)
C2:
PF0134420=Kelch_1=WD(100=84.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCTAGAAACCCAAGTTGG
R:
TGGGTGTGGACTCGCAGTAAT
Band lengths:
263-1478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]