RnoEX6019450 @ rn6
Exon Skipping
Gene
ENSRNOG00000004852 | Sel1l2
Description
SEL1L2 ERAD E3 ligase adaptor subunit [Source:RGD Symbol;Acc:1311278]
Coordinates
chr3:134295980-134303358:-
Coord C1 exon
chr3:134303281-134303358
Coord A exon
chr3:134296602-134296664
Coord C2 exon
chr3:134295980-134296067
Length
63 bp
Sequences
Splice sites
3' ss Seq
CATGTTTTAAACTCTTCTAGGGC
3' ss Score
9.39
5' ss Seq
GTGGTACGT
5' ss Score
8.61
Exon sequences
Seq C1 exon
ATGTATTTAGAGGGGAACGCTGCTGCACCACAAAATAATGCCACTGCCTTCAAATACTTCTCCATGGCGGCCAGCAAG
Seq A exon
GGCAATGCAATTGGTCTTCATGGACTCGGTCTCCTTTACTTCCATGGAAAAGGTGTTCCTGTG
Seq C2 exon
AATTATGGCGAAGCACTTAAATACTTCCAGAAAGCTGCAGAGAAGGGATGGCCAAACGCACAGTTCCACCTAGGCTTCATGTACTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004852-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=FE(67.6=100)
A:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
C2:
PF082387=Sel1=PD(44.4=53.3),PF082387=Sel1=PU(33.3=40.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTGCTGCACCACAAAATA
R:
GAAGCCTAGGTGGAACTGTGC
Band lengths:
140-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]