GgaEX1051580 @ galGal4
Exon Skipping
Gene
ENSGALG00000010581 | SEL1L
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:HGNC Symbol;Acc:HGNC:10717]
Coordinates
chr5:40226663-40228826:-
Coord C1 exon
chr5:40228749-40228826
Coord A exon
chr5:40227971-40228033
Coord C2 exon
chr5:40226663-40226750
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTGTTTTGCTTCAGGGT
3' ss Score
9.57
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ATGTACTCAGAAGGAAGTGATGTTGTACCTCAGAATAATGAAACAGCTCTTCAGTATTTCAAGAAAGCTGCTGATATG
Seq A exon
GGTAATCCAGTTGGGCAGAGTGGATTAGGAATGGCTTACCTCTATGGAAGAGGTGTTCCAGTG
Seq C2 exon
AACTATGAGCTAGCTCTGAAGTATTTCCAGAAGGCTGCAGAACAGGGATGGGTTGATGGACAACTTCAGCTGGGTTCCATGTATTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010581_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=FE(67.6=100)
A:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
C2:
PF082387=Sel1=PD(44.4=53.3),PF082387=Sel1=PU(33.3=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGTGATGTTGTACCTCAGA
R:
GGAACCCAGCTGAAGTTGTCC
Band lengths:
145-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]