RnoEX6029501 @ rn6
Exon Skipping
Gene
ENSRNOG00000004464 | Sel1l
Description
SEL1L ERAD E3 ligase adaptor subunit [Source:RGD Symbol;Acc:620147]
Coordinates
chr6:115582918-115584887:-
Coord C1 exon
chr6:115584810-115584887
Coord A exon
chr6:115583867-115583929
Coord C2 exon
chr6:115582918-115583005
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTCATTTCTCTGGTTTACAGGGC
3' ss Score
8.67
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
ATGTATTCTGAGGGAAGTGACATCGTGCCTCAGAGTAACGAGACGGCACTTCACTACTTCAAGAAAGCTGCTGACATG
Seq A exon
GGCAACCCGGTGGGACAGAGCGGACTTGGAATGGCCTACCTCTATGGAAGAGGAGTTCAAGTT
Seq C2 exon
AATTATGACCTGGCACTCAAGTATTTCCAGAAAGCTGCTGAGCAAGGCTGGGTGGACGGGCAGCTGCAGCTTGGCTCTATGTACTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004464-'25-22,'25-21,27-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=FE(67.6=100)
A:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
C2:
PF082387=Sel1=PD(44.4=53.3),PF082387=Sel1=PU(33.3=40.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGTAACGAGACGGCACT
R:
TACATAGAGCCAAGCTGCAGC
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]