MmuEX6082371 @ mm10
Exon Skipping
Gene
ENSMUSG00000020964 | Sel1l
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:MGI Symbol;Acc:MGI:1329016]
Coordinates
chr12:91816221-91818296:-
Coord C1 exon
chr12:91818219-91818296
Coord A exon
chr12:91817282-91817344
Coord C2 exon
chr12:91816221-91816308
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTGATTTCTCTGGTTTACAGGGC
3' ss Score
8.68
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
ATGTATTCTGAAGGAAGTGACATCGTACCTCAGAGTAATGAGACGGCACTTCACTACTTTAAGAAAGCTGCTGACATG
Seq A exon
GGCAACCCCGTGGGACAGAGCGGGCTTGGAATGGCCTACCTCTACGGAAGAGGCGTTCAAGTT
Seq C2 exon
AATTATGACCTGGCCCTCAAGTATTTCCAGAAAGCTGCTGAGCAAGGCTGGGTGGACGGGCAGCTGCAGCTCGGCTCTATGTACTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020964-'25-21,'25-20,27-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=FE(67.6=100)
A:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
C2:
PF082387=Sel1=PD(44.4=53.3),PF082387=Sel1=PU(33.3=40.0)
Main Skipping Isoform:
ENSMUST00000021347fB16406
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGTAATGAGACGGCACT
R:
AGTACATAGAGCCGAGCTGCA
Band lengths:
134-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types