HsaEX6072406 @ hg19
Exon Skipping
Gene
ENSG00000071537 | SEL1L
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:HGNC Symbol;Acc:10717]
Coordinates
chr14:81954199-81956809:-
Coord C1 exon
chr14:81956732-81956809
Coord A exon
chr14:81955596-81955658
Coord C2 exon
chr14:81954199-81954286
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTGATTTCTCTGCTTTGCAGGGC
3' ss Score
10.02
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
ATGTATTCGGAAGGAAGTGACATTGTACCTCAGAGTAATGAGACAGCTCTCCACTACTTTAAGAAAGCTGCTGACATG
Seq A exon
GGCAACCCAGTTGGACAGAGTGGGCTTGGAATGGCCTACCTCTATGGGAGAGGAGTTCAAGTT
Seq C2 exon
AATTATGATCTAGCCCTTAAGTATTTCCAGAAAGCTGCTGAACAAGGCTGGGTGGATGGGCAGCTACAGCTTGGTTCCATGTACTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071537-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=FE(67.6=100)
A:
PF082387=Sel1=PD(2.7=4.8),PF082387=Sel1=PU(50.0=85.7)
C2:
PF082387=Sel1=PD(44.4=53.3),PF082387=Sel1=PU(33.3=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGAAGGAAGTGACATTGTACC
R:
CCATCCACCCAGCCTTGTTC
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)