RnoEX6022842 @ rn6
Exon Skipping
Gene
ENSRNOG00000055078 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:RGD Symbol;Acc:2480]
Coordinates
chr5:134509665-134511200:-
Coord C1 exon
chr5:134511067-134511200
Coord A exon
chr5:134509844-134509908
Coord C2 exon
chr5:134509665-134509747
Length
65 bp
Sequences
Splice sites
3' ss Seq
GGCCTCTTTTCTGCTTACAGGCA
3' ss Score
8.93
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GGATGATCTGGCCAAGATGACCTACCTGACCATGTGCATGAAGGAGTGCTTCCGCCTCTACCCACCTGTACCCCAAGTATACCGCCAGCTCAACAAGCCAGTCACCTTCGTGGATGGCCGCTCTCTACCTGCAG
Seq A exon
GCAGCCTGATCTCTCTGCACATCTACGCCCTCCACAGGAACAGTACTGTGTGGCCTGATCCAGAG
Seq C2 exon
GTCTTTGACCCACTGCGCTTTTCTCCTGAGAATGCTGCAGGACGGCATCCCTTTGCCTTCATGCCTTTTTCTGCAGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055078-'16-18,'16-15,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.9=100)
A:
PF0006717=p450=FE(4.6=100)
C2:
PF0006717=p450=FE(5.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAAGATGACCTACCTGA
R:
TCCTGCAGCATTCTCAGGAGA
Band lengths:
168-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]