MmuEX6095206 @ mm10
Exon Skipping
Gene
ENSMUSG00000028713 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:MGI Symbol;Acc:MGI:103225]
Coordinates
chr4:115625646-115626940:-
Coord C1 exon
chr4:115626807-115626940
Coord A exon
chr4:115625824-115625884
Coord C2 exon
chr4:115625646-115625728
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTCATTTTGCTTACAGGCAGCCT
3' ss Score
0.51
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GGATGATCTGGCCCAGATGACCTACCTGACCATGTGCATGAAGGAGTGCTTCCGCCTCTACCCACCTGTACCCCAAGTGTACCGCCAGCTCAGCAAGCCAGTAACCTTTGTGGATGGCCGCTCTCTACCTGCAG
Seq A exon
CCTGATCTCTCTGCACATCTATGCCCTCCATCGGAACAGTGCTGTGTGGCCTGACCCAGAG
Seq C2 exon
GTCTTTGACCCACTGCGCTTTTCTCCTGAGAATATGACAGGACGGCATCCCTTTGCCTTCATGCCTTTTTCTGCAGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028713-'20-28,'20-27,21-28
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.7=100)
A:
PF0006717=p450=FE(4.6=100)
C2:
PF0006717=p450=PD(7.2=93.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTACCTGACCATGTGCA
R:
AAAAGCGCAGTGGGTCAAAGA
Band lengths:
139-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types