HsaEX6030774 @ hg19
Exon Skipping
Gene
ENSG00000142973 | CYP4B1
Description
cytochrome P450, family 4, subfamily B, polypeptide 1 [Source:HGNC Symbol;Acc:2644]
Coordinates
chr1:47282720-47283885:+
Coord C1 exon
chr1:47282720-47282853
Coord A exon
chr1:47283637-47283701
Coord C2 exon
chr1:47283803-47283885
Length
65 bp
Sequences
Splice sites
3' ss Seq
AACCTCTGTTCTGCCCACAGGAA
3' ss Score
11.29
5' ss Seq
GAGGTACCC
5' ss Score
7.84
Exon sequences
Seq C1 exon
GGATGATCTGGGCAAAATGACTTATCTGACCATGTGCATCAAGGAGAGCTTCCGCCTCTACCCACCTGTGCCCCAGGTGTACCGCCAGCTCAGCAAGCCTGTCACCTTTGTGGATGGCCGGTCTCTACCTGCAG
Seq A exon
GAAGCCTGATCTCTATGCATATCTATGCCCTCCATAGGAACAGTGCTGTATGGCCCGACCCTGAG
Seq C2 exon
GTCTTTGACTCTCTGCGCTTTTCCACTGAGAATGCATCCAAACGCCATCCCTTTGCCTTTATGCCCTTCTCTGCTGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142973-'8-14,'8-13,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(18.5=95.7)
A:
PF0006717=p450=FE(4.6=100)
C2:
PF0006717=p450=FE(5.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGTGCATCAAGGAGAGC
R:
GCAGAGAAGGGCATAAAGGCA
Band lengths:
180-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)