GgaEX6044758 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNP0]
Coordinates
chr8:20789213-20790352:+
Coord C1 exon
chr8:20789213-20789346
Coord A exon
chr8:20789750-20789814
Coord C2 exon
chr8:20790270-20790352
Length
65 bp
Sequences
Splice sites
3' ss Seq
GAGTATTTTCTCACTTCCAGGCT
3' ss Score
8.68
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GGAGGACCTGGGGAAGATGACATACAGCACCATGTGCATCAAGGAGAGCTTGCGCCTGTTCCCACCCGTCCCTGCAGTGTCCCGAAGGCTCTCTAAACCTGTTACGTTTTCTGATGGGCGCAGCTTACCTGAAG
Seq A exon
GCTCCCAGGTTTCGTTGAACATATTTGGTATCCACAGGAACCGGGATGTATGGGAAGATCCCGAG
Seq C2 exon
GTATTTGATCCCCTGAGGTTTTCTCCTGAGAACTCAGCACACAGGCATTCACATGCATTCCTGCCTTTCTCTGCTGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469-'11-19,'11-15,13-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
PF0006717=p450=FE(4.6=100)
C2:
PF0006717=p450=FE(6.0=100)
Main Skipping Isoform:
ENSGALT00000017045fB4095
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCATCAAGGAGAGCTTGC
R:
AGCAGAGAAAGGCAGGAATGC
Band lengths:
177-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]