RnoEX0026027 @ rn6
Exon Skipping
Gene
ENSRNOG00000043513 | Cyp4x1
Description
cytochrome P450, family 4, subfamily x, polypeptide 1 [Source:RGD Symbol;Acc:628719]
Coordinates
chr5:133930872-133933750:-
Coord C1 exon
chr5:133933617-133933750
Coord A exon
chr5:133932443-133932507
Coord C2 exon
chr5:133930872-133930954
Length
65 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCCCTTCTGCTTCAGGAA
3' ss Score
11.26
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGAACAGCTGGATGAGATACCTTACACTACAATGTGCATCAAGGAGACACTCCGCTTGATTCCTCCCATCCCATCCATCTCCAGGGAACTCAGCAAACCCCTTACCCTCCCAGATGGACACTCGCTGCCTGCAG
Seq A exon
GAATGACTGTGGTCCTTAGTATTTGGGGTCTCCACCACAATCCTGCTGTCTGGAAAGACCCAAAG
Seq C2 exon
GTCTTTGACCCTTTGAGATTCACTAAGGAGAATTCTGAACAGAGACACCCCTGCGCCTTCCTACCATTCTCCAGTGGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043513-'15-14,'15-13,16-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.9=100)
A:
PF0006717=p450=FE(4.6=100)
C2:
PF0006717=p450=FE(5.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACTCCGCTTGATTCCTCC
R:
GGACCACTGGAGAATGGTAGGA
Band lengths:
169-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]