MmuEX6095189 @ mm10
Exon Skipping
Gene
ENSMUSG00000047155 | Cyp4x1
Description
cytochrome P450, family 4, subfamily x, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1932403]
Coordinates
chr4:115110029-115112939:-
Coord C1 exon
chr4:115112806-115112939
Coord A exon
chr4:115111618-115111682
Coord C2 exon
chr4:115110029-115110111
Length
65 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCCCTTCTGTCTCAGGTA
3' ss Score
11.41
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGAACAGCTGGATGAGATGTCATACACCACAATGTGCATCAAGGAGACACTCCGCTTGATTCCTCCTGTCCCATCCATCTCCAGGGAGCTCAGCAAACCCCTTACCCTCCCAGATGGACACTCACTGCCTGCAG
Seq A exon
GTATGACTGTGGTTCTTAGTATTTGGGGTCTCCACCACAACCCTGCTGTCTGGAACGACCCAAAG
Seq C2 exon
GTCTTTGACCCCTTGAGATTCACTAAGGAGAATTCTGATCAGAGACACCCCTGTGCCTTCCTACCATTCTCCAGTGGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047155-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.9=100)
A:
PF0006717=p450=FE(4.6=100)
C2:
PF0006717=p450=FE(5.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTCCGCTTGATTCCTCCT
R:
GGACCACTGGAGAATGGTAGGA
Band lengths:
168-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types