BtaEX6017979 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015647 | CYP4X1
Description
cytochrome P450, family 4, subfamily X, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20244]
Coordinates
chr3:99667152-99669570:-
Coord C1 exon
chr3:99669437-99669570
Coord A exon
chr3:99667989-99668053
Coord C2 exon
chr3:99667152-99667231
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTATTTCCTTCCTTTCTCAGGAA
3' ss Score
11.67
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGACCAACTGAGCGAGATGTCATACACCACAATGTGCATTAAGGAGTCACTCCGCTTGGCACCTCCAGCCGTGTCCATTTCCAGACAACTCAGCAAGCCCATTACCTTTCCAGATGGACGGTCTTTGCCTGCAG
Seq A exon
GAATGACTGTGGTTCTCAGTATCTGGGGTCTCCACCACAACCCCGCCGTCTGGGAAAACCCAGAG
Seq C2 exon
GTCTTTGACCCCTTGAGGTTCTCCCAGGAATGTAATAAAAGACACTCCCATGCTTACTTACCATTCTCATCTGGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015647-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(4.8=100)
C2:
PF0006717=p450=FE(6.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCAACTGAGCGAGATGTC
R:
ACATTCCTGGGAGAACCTCAAG
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]