RnoEX6023115 @ rn6
Exon Skipping
Gene
ENSRNOG00000009341 | Hivep3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:RGD Symbol;Acc:1311252]
Coordinates
chr5:139067737-139074725:+
Coord C1 exon
chr5:139067737-139067823
Coord A exon
chr5:139071088-139071998
Coord C2 exon
chr5:139072988-139074725
Length
911 bp
Sequences
Splice sites
3' ss Seq
GCCCTGTGTCCTCCCCTCAGGAA
3' ss Score
12.1
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGAATCTGACTAAGCACATGAAGTCGAAAGCCCACAGCAAAAAGTGCCAAGAGACGGGGGTGCTGGAGGAGCTGGAAGCCGAAGAAG
Seq A exon
GAACCAGTGACGACCTACTCCAGGACTCAGAGGGGCGAGAGGGCTCCGAAGCTGTGGAGGAGCACCAGTTTTCAGACCTGGAGGACTCTGACTCAGACTCAGACCTGGATGAAGATGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGAGCCAGGATGAGCTGTCCAGGCCATCCTCAGAGGCAGCTCCACTCTGCCTGCCAGCCACACTACAGGAGGACTCCTCCCTGATTCGGGGCCCTCAGCCTCCAGATGCCACTTCAGACGCGGCCCCACGAGGCAGCTCCATCTCAGAAGCCACGCGTCTGACAGCCAGCAGCTGTTCCACACCCAGCCAGGGTACCCAAGGCCTTCCTCGGCTGGGACTGGCCCCACTGGAGAAAGGCACGAGCTCAGCCCTGAGTCCCAAGGCCACATCCCCTAGGAGGCCGTGGTCCCCAAGCAAAGAAGCAGGCAGCCGCCCCTCACTCACTCGCAAACATTCACTCACCAAAACCGACTCATCTCCCCAGCGATGTTCACCGGCCCGAGCTCAGGCCTCAGTCGCGAGCACACCTGGTCCCCAGACGGGCCCAGGAAGGGACCTAAGTCCTCACCTTTGTGGGTCTCCGAGACCAGAGTTGTCCTGTCTGACTCCCTACCCCATAGGAAGAGAGGTGCCCGCTGGACTTGAGAGTGCCACAGTCACAGGCACCCCCAGATGTTCACCCACCAGGAGACGGTCCCTGGGTCGGGCCGAGTCATCGCCGCCGCACACAGTGCTGCCGGGGACGTGGGCCCTAGGTGGGCCCTGCAGCCCCTCAGTGGACAAGTATGGCCTGGGCTTGGGGCCGGTTCCACGGGCTCTCCTCCAGCCCGTGCCTCTACCTCACACACTTCTCAGCAGAAGCCCGGAAACGTGCGCCTCTGCATGG
Seq C2 exon
AAGACTGAATCCCGAAGTCCATCAGCTGGTCCTGCTCCTCTCTCTTCCCGACCATCCTCTGCCCCTCATGACTTCCACGGCCACCTCCCTAGCCGAAGTGAGGAGAACCTCTTCAGCCACCTGCCTCTGCATTCCCAGCACCTGAATCGCACCCCCTGCCCCCTCATTCCCATCGGTGGGATCCAAATGGTACAGGCCCGACCAGGAGCCCACCCCACCCTGCTGTCAGGACCCTGTGCAGCCTGGGTCAGTGGCTTCTCAGGGGGTGGCAGTGACCTAACTGGGGCCCGAGAGGCCCAGGAGCGCAGCCGCTGGAGTCCCACGGAGAGCCCTTCAGCATCAGTGTCCCCTGTGGCCAAGGTCTCCAAGTTTACACTCTCTTCAGAGCTGGAGGAGGAAAGGACCAGCCGAGGCCCAGGAAGACCTCCTGCCTGGGAACCTCACAGGGCTGAAGCCCCTGCAGAAACCATGGGCACACACAGCCCCTGCCCCCCACAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009341-'8-13,'8-12,9-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.901 C2=0.894
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=PD(44.0=36.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGTCGAAAGCCCACAGC
R:
CCCCAGTTAGGTCACTGCCA
Band lengths:
356-1267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]