BtaEX6018499 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020745 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:HGNC:13561]
Coordinates
chr3:105265350-105267195:+
Coord C1 exon
chr3:105265350-105266076
Coord A exon
chr3:105266159-105266225
Coord C2 exon
chr3:105267160-105267195
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTGGCCCCCCGGGCTCTCTACCC
3' ss Score
-12.29
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGGCAGCTCGGTCTCAGAAGCCGAGCGCTCGGCACCCAGCAGCTGCTCCACATCCAGCCAAAGCATCCTGTGCCTCCCCCGGCTGGCACCGGCCCCCCGGGGCCCAGTGGAGAAGGACACAGTCTCGGCCCTGAGCTCCCAGGCCCTGTCCCCAAGGAGGCCGTGGTCCCCAAGCAAAGAAGCAGGCAGCCACCTACCACTCACCCCAAAACACTCACTAACCAAAAGCTACTCGTCTCCCCAGCGACATTCACCGGCCCGAGAGCCACTGGCCTCAGCCCCGAGTCCGCCTGGCTCCCAGACGGGCCCTCTCCCCTGCGGGTCCCCGAGACTCGAGCTGTCGCCTCTTGCCCTCCACCCCCTGGGAAGGGAACTGCCACTTCGAGCGCGCCTGCCCCCCGAACGCAAGGGCGCTGCAGACCCAGGCCCCCCCAGACACTCGCCCACCAGGAGATGGTCTCCAGGCCAGGCCGAGTCACCACCACGGTCAGCGCTGCCAG
Seq A exon
CCCGCCCGCGCCTCTACCTCACAAGCTTCTCGGCAGAAGCCCAGCGGAGACCTGCACCTCCACATGG
Seq C2 exon
TTTGGGGCTCAAGTTAAAATTCCTGGTGGTGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020745-'12-15,'12-14,13-15=AN
Average complexity
A_NA
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.996 A=0.957 C2=0.308
Domain overlap (PFAM):
C1:
PF065247=NOA36=PD(34.2=21.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGAACTGCCACTTCGAG
R:
TCACCACCAGGAATTTTAACTTGA
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]