DreEX6072584 @ danRer10
Exon Skipping
Gene
ENSDARG00000075928 | hivep3a
Description
human immunodeficiency virus type I enhancer binding protein 3a [Source:ZFIN;Acc:ZDB-GENE-081029-2]
Coordinates
chr19:15402606-15410196:-
Coord C1 exon
chr19:15410095-15410196
Coord A exon
chr19:15408159-15408829
Coord C2 exon
chr19:15402606-15404112
Length
671 bp
Sequences
Splice sites
3' ss Seq
GTGACTCTTTTGTGCTGTAGGTG
3' ss Score
9.21
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GGAATCTAACCAAACATATGAAGTCAAAGGCTCATGGGAAGAGATGTCCAGAGGGACCTGCTCCAGGACCAGTCCAGTGTGAGCTGGAGACAGATGAAGGAG
Seq A exon
GTGACAGTGCTAAACATTTCCTTGAGACAGAGGAAGTGGAAGAACACCAGTTCTCGGATGCGGAAGAGTCCGATGACGAAGCTGAGGATAATGATGAAGGTGACGAGCAGACTTCATGCTCCTCTTCGTCATCCAAGTGGACGTCCATCTCCAGAGATGATTCTGGCTCGTGTGACATCTTAGGCCTTTCAAACCCAGGCTGGGAACAGCATCCCAAACCGCCTGTCAGTATGAGCCCTCGAAAGCCCAGCCACTATGGAGAAGCTTCCTCTCCGAAGACAACAAAGTCTATAGTGACACTTTTGCACCTTGATCCCACCACAGGAATGTGCTCATCCCCAATCCGTAGCCTTTCTCCTGGCCTGCAAATGTCCCCTGCTTTACCACAGTCTCCTGGACGGGACATGTCCCCTCTACGATGTCCTTCTCCAAGACTAAGTCTGTCTCCATCATCCTGTCTGTCCTCATTGTCTCCTTCTGACCGCTCGACTTCATCCTTCTCCGAGAGACGTGTGTCCCCCATTAGAGACCTGTCCCCCATACGGCCTTCGTCTCCCAGTTGTCCCCTGGCGTTGACTGTTGGGGCCAGTGTAACTATTCAGTACCAAGCTGACAGACCCAGAGCTTCAACAAAAGCCTCACCTAACAGGTTAAACCTCAAGAAAAAAACG
Seq C2 exon
GAGAAAACACACAGTCCTCACAGAAGGACCAACATGACCCAGTCTTGGCCTCCAGCACACGGGCGTCTGTCCAGGAACATGCAGCCCAGGGAAGGCCAGCGTGTGTTAAGTCACCTGCCTCTGCACTCCCAGCCTCAGGTGATGATTCCCAATCTCAGCCTCACCATTCCTATCGGCGGGATCCAGATGGTGCAGCCACGCTCCAATATGCTCCTCCGGAGTACATCTCTGAACCACAGCGTAGCCCAGATGACTGTCACTGTGCTGACCAAGGAGAAAGGCGCTGGGAGGAGTCCTGTGGGTGAAGTTCCTCATCGGAAGAATCAGCTGATAGTGTTTACAGAGCCTGCGGTGGAGATGAGCTCCAAGAGTGAAGCTTCCTCTGATGAGGACAAAGAGCAAATCCATGGAGTGGTTCAAGCAGAGCTTTTTTCTAGAAAAAAAGAAGTTCCCAGTGTCGCAATGACAACCTGGAAGAGTATCTCTCAAAAAAATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075928-'7-11,'7-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.875 C2=0.832
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAGAGATGTCCAGAGGG
R:
TCTCCTTGGTCAGCACAGTGA
Band lengths:
345-1016
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]